miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 35759 0.71 0.773477
Target:  5'- cCGCGAAGGCGGCucgggccgagacaGGAGGcccgcgggcgccauGGCGCGGGa -3'
miRNA:   3'- -GCGUUUCUGCUG-------------CCUCU--------------CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 36346 0.68 0.911495
Target:  5'- aGCAGAGACugccGCGGAGGGGggaGCGGa- -3'
miRNA:   3'- gCGUUUCUGc---UGCCUCUCUg--CGCUca -5'
23612 5' -53.8 NC_005261.1 + 39267 0.68 0.905327
Target:  5'- aGCGAGGuCuuCGGGGAGGCcCGGGUg -3'
miRNA:   3'- gCGUUUCuGcuGCCUCUCUGcGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 42173 0.66 0.95605
Target:  5'- aGCGAGccGugGACGcAG-GGCGCGAGc -3'
miRNA:   3'- gCGUUU--CugCUGCcUCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 42836 0.7 0.822535
Target:  5'- aGCAccuGGGCGAUGGcAGAG-UGCGAGc -3'
miRNA:   3'- gCGUu--UCUGCUGCC-UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 43772 0.69 0.878279
Target:  5'- uGCucguGGGGCGgcgcGCGGAGGGcgcCGCGGGUg -3'
miRNA:   3'- gCGu---UUCUGC----UGCCUCUCu--GCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 47886 0.69 0.878279
Target:  5'- cCGgGGAG-CGGCGGcGGcGGCGCGAGg -3'
miRNA:   3'- -GCgUUUCuGCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 48133 0.76 0.484818
Target:  5'- gCGCGggaAAGAgGGgGGAGGGugGCGAGa -3'
miRNA:   3'- -GCGU---UUCUgCUgCCUCUCugCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 48172 0.72 0.738587
Target:  5'- gGCAGcgggGGugGACGGGGgaagggcaaacaGGGCGCGGGc -3'
miRNA:   3'- gCGUU----UCugCUGCCUC------------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 50594 0.68 0.898918
Target:  5'- aGCGGGGAgGGCaGGGAGACGgGGc- -3'
miRNA:   3'- gCGUUUCUgCUGcCUCUCUGCgCUca -5'
23612 5' -53.8 NC_005261.1 + 50636 0.7 0.839463
Target:  5'- aCGC--GGGCGGCGGGGuGGCGCcGGc -3'
miRNA:   3'- -GCGuuUCUGCUGCCUCuCUGCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 55209 0.68 0.88539
Target:  5'- gCGCGGAucCGGCGGcccGAGGCgGCGAGg -3'
miRNA:   3'- -GCGUUUcuGCUGCCu--CUCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 56006 0.7 0.839463
Target:  5'- gGCGGGGGCGgggGCGGGGAaGACGCa--- -3'
miRNA:   3'- gCGUUUCUGC---UGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 56111 0.68 0.913895
Target:  5'- gCGCGAGcGGCGggagcgcgccgcaggGCGG-GGGGCGCGGGc -3'
miRNA:   3'- -GCGUUU-CUGC---------------UGCCuCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 56163 0.66 0.95605
Target:  5'- gGCAgcGGCGgggcccGCGGGGAGgacgacGCGCGGGc -3'
miRNA:   3'- gCGUuuCUGC------UGCCUCUC------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 57193 0.7 0.839463
Target:  5'- gCGgGAAGGgGGgGGGGGGcGCGCGGGUc -3'
miRNA:   3'- -GCgUUUCUgCUgCCUCUC-UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 57816 0.69 0.868699
Target:  5'- cCGUGAAGGCGAaGGGGuccacgugcuccgcGGGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUGCUgCCUC--------------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 58277 0.67 0.933731
Target:  5'- cCGCGcucacGGGGcCGGCGcgccGGGGGGCGCGGGg -3'
miRNA:   3'- -GCGU-----UUCU-GCUGC----CUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 59060 0.71 0.748422
Target:  5'- gCGCGcgcGGCcGCGGAGAGcgcGCGCGGGUg -3'
miRNA:   3'- -GCGUuu-CUGcUGCCUCUC---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 60060 0.66 0.959805
Target:  5'- gGCGAAGAgCGGCGGccGGucCGCGGGc -3'
miRNA:   3'- gCGUUUCU-GCUGCCucUCu-GCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.