miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 84021 1.08 0.005193
Target:  5'- gCGCAAAGACGACGGAGAGACGCGAGUa -3'
miRNA:   3'- -GCGUUUCUGCUGCCUCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 81759 0.66 0.947841
Target:  5'- aCGCGAAGACGGCGcGGGccaGGAcgagcuCGCGGa- -3'
miRNA:   3'- -GCGUUUCUGCUGC-CUC---UCU------GCGCUca -5'
23612 5' -53.8 NC_005261.1 + 81231 0.66 0.961949
Target:  5'- gCGCccGAGGGCGGCGGGcacacguaaaaGCGCGAGUu -3'
miRNA:   3'- -GCG--UUUCUGCUGCCUcuc--------UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 80068 0.7 0.839463
Target:  5'- gGCGcGGGgGGCGuGGGGGACGCGGa- -3'
miRNA:   3'- gCGUuUCUgCUGC-CUCUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 78529 0.72 0.738587
Target:  5'- nGCGGAGGCGGCgaggggaaGGGGAGcCGCGAu- -3'
miRNA:   3'- gCGUUUCUGCUG--------CCUCUCuGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 78506 0.79 0.352472
Target:  5'- aCGC-GAGAaGAUGGGGAGGCGCGAGc -3'
miRNA:   3'- -GCGuUUCUgCUGCCUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 78429 0.75 0.534011
Target:  5'- gGgGGGGGCGAUGGGGAGAagGCGGGg -3'
miRNA:   3'- gCgUUUCUGCUGCCUCUCUg-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 77761 0.71 0.758152
Target:  5'- aCGCAGccgGGGCGGCGG--GGACGaCGAGg -3'
miRNA:   3'- -GCGUU---UCUGCUGCCucUCUGC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 76557 0.67 0.945193
Target:  5'- gGCAuGGGCGAC-GAGGGcgagcucguccucacGCGCGAGc -3'
miRNA:   3'- gCGUuUCUGCUGcCUCUC---------------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 74919 0.69 0.870943
Target:  5'- gCGCGGGGGagggcgagGACGGGGAcugcGGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUg-------CUGCCUCU----CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 73666 0.69 0.855618
Target:  5'- gCGCAc-GACG-CGGAGggcGGGCGCGGGc -3'
miRNA:   3'- -GCGUuuCUGCuGCCUC---UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 73594 0.72 0.738587
Target:  5'- gGCGGAGGCGGCGGccgcGAGcGCGCGGc- -3'
miRNA:   3'- gCGUUUCUGCUGCCu---CUC-UGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 72447 0.67 0.923103
Target:  5'- gGCGGGGGCGcccGCGGcGAGcgcggcgaGCGCGAGc -3'
miRNA:   3'- gCGUUUCUGC---UGCCuCUC--------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 69725 0.67 0.928539
Target:  5'- aGCGAGGAgGAagaGGAgGAGGCG-GAGg -3'
miRNA:   3'- gCGUUUCUgCUg--CCU-CUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 69335 0.71 0.794918
Target:  5'- gGCGAcaGCGACGGAGAcggcgacGACGCGGc- -3'
miRNA:   3'- gCGUUucUGCUGCCUCU-------CUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 62896 0.67 0.923103
Target:  5'- gCGCGAGGcGgGGCGGGGcGGACGCGc-- -3'
miRNA:   3'- -GCGUUUC-UgCUGCCUC-UCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 60060 0.66 0.959805
Target:  5'- gGCGAAGAgCGGCGGccGGucCGCGGGc -3'
miRNA:   3'- gCGUUUCU-GCUGCCucUCu-GCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 59060 0.71 0.748422
Target:  5'- gCGCGcgcGGCcGCGGAGAGcgcGCGCGGGUg -3'
miRNA:   3'- -GCGUuu-CUGcUGCCUCUC---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 58277 0.67 0.933731
Target:  5'- cCGCGcucacGGGGcCGGCGcgccGGGGGGCGCGGGg -3'
miRNA:   3'- -GCGU-----UUCU-GCUGC----CUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 57816 0.69 0.868699
Target:  5'- cCGUGAAGGCGAaGGGGuccacgugcuccgcGGGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUGCUgCCUC--------------UCUGCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.