miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 42173 0.66 0.95605
Target:  5'- aGCGAGccGugGACGcAG-GGCGCGAGc -3'
miRNA:   3'- gCGUUU--CugCUGCcUCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 23541 0.66 0.952063
Target:  5'- gGCAGAGGCGGCaGGAGccguCGCaGGUg -3'
miRNA:   3'- gCGUUUCUGCUG-CCUCucu-GCGcUCA- -5'
23612 5' -53.8 NC_005261.1 + 108878 0.66 0.950821
Target:  5'- aGCGGguGGACGACGGccgcgcugcccgccGGcgagcgGGGCGCGGGg -3'
miRNA:   3'- gCGUU--UCUGCUGCC--------------UC------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 81759 0.66 0.947841
Target:  5'- aCGCGAAGACGGCGcGGGccaGGAcgagcuCGCGGa- -3'
miRNA:   3'- -GCGUUUCUGCUGC-CUC---UCU------GCGCUca -5'
23612 5' -53.8 NC_005261.1 + 99762 0.66 0.947841
Target:  5'- aGCAcgucGGACGG-GGAGAGGCGgccCGGGUc -3'
miRNA:   3'- gCGUu---UCUGCUgCCUCUCUGC---GCUCA- -5'
23612 5' -53.8 NC_005261.1 + 90882 0.66 0.947841
Target:  5'- gCGCGcuGGGCGACGGcauGGCGCGGc- -3'
miRNA:   3'- -GCGUu-UCUGCUGCCucuCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 29426 0.66 0.963333
Target:  5'- cCGCGGGGcccGCGGCcguguucgugccGGAGAuggggGACGCGGGg -3'
miRNA:   3'- -GCGUUUC---UGCUG------------CCUCU-----CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 25973 0.66 0.947406
Target:  5'- cCGCAGGGugGAgCGGGaaacgauGAGGgGUGGGg -3'
miRNA:   3'- -GCGUUUCugCU-GCCU-------CUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 7296 0.66 0.947406
Target:  5'- gGCAGAGggagagaAgGGgGGAGAGagaGCGCGAGa -3'
miRNA:   3'- gCGUUUC-------UgCUgCCUCUC---UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 76557 0.67 0.945193
Target:  5'- gGCAuGGGCGAC-GAGGGcgagcucguccucacGCGCGAGc -3'
miRNA:   3'- gCGUuUCUGCUGcCUCUC---------------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 119455 0.67 0.94338
Target:  5'- aCGcCGAAGgacagcACGACGGAcGAGACGCccuuGGGg -3'
miRNA:   3'- -GC-GUUUC------UGCUGCCU-CUCUGCG----CUCa -5'
23612 5' -53.8 NC_005261.1 + 1848 0.67 0.94338
Target:  5'- gCGCGAAGGCGcCGGGcccgaAGACGCGc-- -3'
miRNA:   3'- -GCGUUUCUGCuGCCUc----UCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 20571 0.67 0.94338
Target:  5'- gCGCAgcGGCGcCGGc--GGCGCGGGUg -3'
miRNA:   3'- -GCGUuuCUGCuGCCucuCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 10615 0.67 0.94338
Target:  5'- aGCGAGGACGACuacGAG-GACGacuaCGAGg -3'
miRNA:   3'- gCGUUUCUGCUGc--CUCuCUGC----GCUCa -5'
23612 5' -53.8 NC_005261.1 + 28253 0.67 0.94338
Target:  5'- aGCGGGGGCugcuCGGGGGGGCGCu--- -3'
miRNA:   3'- gCGUUUCUGcu--GCCUCUCUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 97823 0.67 0.94292
Target:  5'- cCGCA--GACGGCGGcaaaaacGGGGGCgGCGGGc -3'
miRNA:   3'- -GCGUuuCUGCUGCC-------UCUCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 5321 0.67 0.938677
Target:  5'- --gGAGGGgGuaGgGGAGAGGCGCGGGUc -3'
miRNA:   3'- gcgUUUCUgC--UgCCUCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 58277 0.67 0.933731
Target:  5'- cCGCGcucacGGGGcCGGCGcgccGGGGGGCGCGGGg -3'
miRNA:   3'- -GCGU-----UUCU-GCUGC----CUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 5371 0.67 0.933731
Target:  5'- -aCGGAGACGGgGGAGGGAgG-GAGg -3'
miRNA:   3'- gcGUUUCUGCUgCCUCUCUgCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 136242 0.67 0.933731
Target:  5'- aGCGAGGGCagagGGCcGAGAGAaggcaCGCGAGa -3'
miRNA:   3'- gCGUUUCUG----CUGcCUCUCU-----GCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.