miRNA display CGI


Results 81 - 100 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 462 0.7 0.831092
Target:  5'- cCGCGAcGGcCGGCGG-GAuGGCGCGGGg -3'
miRNA:   3'- -GCGUUuCU-GCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 30686 0.7 0.831092
Target:  5'- gGaCGGGGACgggGACGGGGAGGCccGCGGGa -3'
miRNA:   3'- gC-GUUUCUG---CUGCCUCUCUG--CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 134846 0.7 0.822535
Target:  5'- uGCGAGGAgGACGGGGAcaaGGCGCc--- -3'
miRNA:   3'- gCGUUUCUgCUGCCUCU---CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 129653 0.7 0.822535
Target:  5'- gGCGgcGGCGGCGGcAGGGGCGgGAc- -3'
miRNA:   3'- gCGUuuCUGCUGCC-UCUCUGCgCUca -5'
23612 5' -53.8 NC_005261.1 + 128116 0.7 0.822535
Target:  5'- gCGCGGGGuCGggccgaguGCGGAGAGAgGCGAc- -3'
miRNA:   3'- -GCGUUUCuGC--------UGCCUCUCUgCGCUca -5'
23612 5' -53.8 NC_005261.1 + 42836 0.7 0.822535
Target:  5'- aGCAccuGGGCGAUGGcAGAG-UGCGAGc -3'
miRNA:   3'- gCGUu--UCUGCUGCC-UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 11465 0.7 0.822535
Target:  5'- aGCGGagcGGGCG-CGGAGGGGCgggGCGGGg -3'
miRNA:   3'- gCGUU---UCUGCuGCCUCUCUG---CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 33808 0.7 0.813801
Target:  5'- gGCGGgcuugucuuuGGGCGGCcGGGGGGCGCGGGc -3'
miRNA:   3'- gCGUU----------UCUGCUGcCUCUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 13687 0.7 0.813801
Target:  5'- gCGCGcGGGCGugGGgcggggcgggcuGGGGGCGgGGGUg -3'
miRNA:   3'- -GCGUuUCUGCugCC------------UCUCUGCgCUCA- -5'
23612 5' -53.8 NC_005261.1 + 1116 0.7 0.804897
Target:  5'- aCGCGGAcGACGA-GGAG-GACGCgGAGg -3'
miRNA:   3'- -GCGUUU-CUGCUgCCUCuCUGCG-CUCa -5'
23612 5' -53.8 NC_005261.1 + 105000 0.7 0.804897
Target:  5'- aGCGcGGGCGGCGGucGGGGCGCcAGg -3'
miRNA:   3'- gCGUuUCUGCUGCCu-CUCUGCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 24715 0.71 0.795833
Target:  5'- gGCAGGGuAUGugGGAGGGgcucuuuuACGUGAGg -3'
miRNA:   3'- gCGUUUC-UGCugCCUCUC--------UGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 69335 0.71 0.794918
Target:  5'- gGCGAcaGCGACGGAGAcggcgacGACGCGGc- -3'
miRNA:   3'- gCGUUucUGCUGCCUCU-------CUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 93559 0.71 0.786617
Target:  5'- aGCGGucGACGGCGGugcggcGGGACGCGAu- -3'
miRNA:   3'- gCGUUu-CUGCUGCCu-----CUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 32917 0.71 0.786617
Target:  5'- gCGCGuggGGGGCGGCGGgcgggGGGGGgGCGGGg -3'
miRNA:   3'- -GCGU---UUCUGCUGCC-----UCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 35759 0.71 0.773477
Target:  5'- cCGCGAAGGCGGCucgggccgagacaGGAGGcccgcgggcgccauGGCGCGGGa -3'
miRNA:   3'- -GCGUUUCUGCUG-------------CCUCU--------------CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 77761 0.71 0.758152
Target:  5'- aCGCAGccgGGGCGGCGG--GGACGaCGAGg -3'
miRNA:   3'- -GCGUU---UCUGCUGCCucUCUGC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 59060 0.71 0.748422
Target:  5'- gCGCGcgcGGCcGCGGAGAGcgcGCGCGGGUg -3'
miRNA:   3'- -GCGUuu-CUGcUGCCUCUC---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 73594 0.72 0.738587
Target:  5'- gGCGGAGGCGGCGGccgcGAGcGCGCGGc- -3'
miRNA:   3'- gCGUUUCUGCUGCCu---CUC-UGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 78529 0.72 0.738587
Target:  5'- nGCGGAGGCGGCgaggggaaGGGGAGcCGCGAu- -3'
miRNA:   3'- gCGUUUCUGCUG--------CCUCUCuGCGCUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.