miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 90205 0.73 0.667614
Target:  5'- gCGCGGGGGCGGCGGAGcGcccucGCGCGGc- -3'
miRNA:   3'- -GCGUUUCUGCUGCCUCuC-----UGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 90882 0.66 0.947841
Target:  5'- gCGCGcuGGGCGACGGcauGGCGCGGc- -3'
miRNA:   3'- -GCGUu-UCUGCUGCCucuCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 93559 0.71 0.786617
Target:  5'- aGCGGucGACGGCGGugcggcGGGACGCGAu- -3'
miRNA:   3'- gCGUUu-CUGCUGCCu-----CUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 96846 0.72 0.698392
Target:  5'- gGCcGGGGuCGACGGggggcucgGGGGGCGCGGGUa -3'
miRNA:   3'- gCGuUUCU-GCUGCC--------UCUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 97628 0.76 0.484818
Target:  5'- gGCGGAG-CgGGCGGAGcGGGCGCGGGUg -3'
miRNA:   3'- gCGUUUCuG-CUGCCUC-UCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 97697 0.77 0.465747
Target:  5'- uGCcGGGGCGGUGGGGAGACgGCGGGUg -3'
miRNA:   3'- gCGuUUCUGCUGCCUCUCUG-CGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 97823 0.67 0.94292
Target:  5'- cCGCA--GACGGCGGcaaaaacGGGGGCgGCGGGc -3'
miRNA:   3'- -GCGUuuCUGCUGCC-------UCUCUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98001 0.69 0.870943
Target:  5'- --gGGAGGCGGCGGGGGcgcuGGCgGCGAGg -3'
miRNA:   3'- gcgUUUCUGCUGCCUCU----CUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98351 0.74 0.626201
Target:  5'- aCGCGGGGGCGGgGGuG-GGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUGCUgCCuCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98385 0.72 0.728657
Target:  5'- gCGCAAuaccGGCGugGGGGcGGGCGCGGa- -3'
miRNA:   3'- -GCGUUu---CUGCugCCUC-UCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 98504 0.67 0.928539
Target:  5'- gGUAAGGugccgGCGuACGGGcAGGCGCGAGa -3'
miRNA:   3'- gCGUUUC-----UGC-UGCCUcUCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98670 0.68 0.904697
Target:  5'- gGCGAGGGCGGgcuccgcCGGggccGGAGGCGCGGc- -3'
miRNA:   3'- gCGUUUCUGCU-------GCC----UCUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 99762 0.66 0.947841
Target:  5'- aGCAcgucGGACGG-GGAGAGGCGgccCGGGUc -3'
miRNA:   3'- gCGUu---UCUGCUgCCUCUCUGC---GCUCA- -5'
23612 5' -53.8 NC_005261.1 + 100656 0.68 0.905327
Target:  5'- cCGCAAcGGCGcgcgucGCGGGGuucgcGCGCGAGUg -3'
miRNA:   3'- -GCGUUuCUGC------UGCCUCuc---UGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 103863 0.69 0.878279
Target:  5'- cCGCGgcGGCGGCGGGGcGGCGCc--- -3'
miRNA:   3'- -GCGUuuCUGCUGCCUCuCUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 105000 0.7 0.804897
Target:  5'- aGCGcGGGCGGCGGucGGGGCGCcAGg -3'
miRNA:   3'- gCGUuUCUGCUGCCu-CUCUGCGcUCa -5'
23612 5' -53.8 NC_005261.1 + 108878 0.66 0.950821
Target:  5'- aGCGGguGGACGACGGccgcgcugcccgccGGcgagcgGGGCGCGGGg -3'
miRNA:   3'- gCGUU--UCUGCUGCC--------------UC------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 110790 0.69 0.870943
Target:  5'- uGCuccgGGGGACGGCGGgcgaGGAGGCGgGGGc -3'
miRNA:   3'- gCG----UUUCUGCUGCC----UCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 112656 0.66 0.95605
Target:  5'- uCGCAgccGAGuACGAgCGGcuGGAG-CGCGAGg -3'
miRNA:   3'- -GCGU---UUC-UGCU-GCC--UCUCuGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 113398 0.68 0.911495
Target:  5'- uCGCAGG--UGACGGAG-GGCaGCGAGg -3'
miRNA:   3'- -GCGUUUcuGCUGCCUCuCUG-CGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.