miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 123404 0.66 0.505617
Target:  5'- cGCCGCUUGcCGGCCagGGgcgggcucgccacggGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGAC-GUCGG--CCa--------------CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 125861 0.66 0.50469
Target:  5'- aGGCgGCaaacuCGGCCGGgGCgGCGCCc -3'
miRNA:   3'- -CCGgUGgac--GUCGGCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 122349 0.66 0.50469
Target:  5'- aGCuCGCCUgGCGGCCGcG-GCuCGCGCg- -3'
miRNA:   3'- cCG-GUGGA-CGUCGGC-CaCG-GCGCGga -5'
23613 3' -64.6 NC_005261.1 + 121394 0.66 0.50469
Target:  5'- cGGCggCGCCUGCccgAGUgcgaCGGcUGCCGcCGCCg -3'
miRNA:   3'- -CCG--GUGGACG---UCG----GCC-ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 121261 0.66 0.50469
Target:  5'- gGGuCCGCC-GCAGaCGGggcgGCCGCcccgGCCUc -3'
miRNA:   3'- -CC-GGUGGaCGUCgGCCa---CGGCG----CGGA- -5'
23613 3' -64.6 NC_005261.1 + 93778 0.66 0.50469
Target:  5'- cGUCGCa-GCAGgugcccCCGGgacGCCGCGCCg -3'
miRNA:   3'- cCGGUGgaCGUC------GGCCa--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 38527 0.66 0.50469
Target:  5'- cGCUGgCUGCGcgcGCCGG-GCacaGCGCCg -3'
miRNA:   3'- cCGGUgGACGU---CGGCCaCGg--CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 33811 0.66 0.50469
Target:  5'- gGGCUugUcuuuggGCGGCCGGgggGCgCGgGCCc -3'
miRNA:   3'- -CCGGugGa-----CGUCGGCCa--CG-GCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 30877 0.66 0.50469
Target:  5'- gGGCCGCCggcccUGCcgcccgagcucgGGCUGGgGCCGC-CCg -3'
miRNA:   3'- -CCGGUGG-----ACG------------UCGGCCaCGGCGcGGa -5'
23613 3' -64.6 NC_005261.1 + 23614 0.66 0.50469
Target:  5'- cGCCGCC-GCuGCCGG-GgCGCGgCg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCgGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 75532 0.66 0.50469
Target:  5'- cGCCGCgCUGCAG-CGGcugcgcguccUGCCG-GCCa -3'
miRNA:   3'- cCGGUG-GACGUCgGCC----------ACGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 83757 0.66 0.50469
Target:  5'- cGGCgCGCCa-CGGCCGGgucGCaGCGCCc -3'
miRNA:   3'- -CCG-GUGGacGUCGGCCa--CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 106374 0.66 0.50469
Target:  5'- cGCCGCC-GUcGCCGuUGCCGcCGCUg -3'
miRNA:   3'- cCGGUGGaCGuCGGCcACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 32539 0.66 0.50469
Target:  5'- cGGCC-CCggccGCGGCgCGG-GCCgGCGCg- -3'
miRNA:   3'- -CCGGuGGa---CGUCG-GCCaCGG-CGCGga -5'
23613 3' -64.6 NC_005261.1 + 137535 0.66 0.50469
Target:  5'- uGGCCACCaagGuUGGCuUGGUGCCaacccuagccucGCGCCc -3'
miRNA:   3'- -CCGGUGGa--C-GUCG-GCCACGG------------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 135442 0.66 0.50469
Target:  5'- cGCCGCCcagGCGGCgCGGgcGCUGCGggaCCUc -3'
miRNA:   3'- cCGGUGGa--CGUCG-GCCa-CGGCGC---GGA- -5'
23613 3' -64.6 NC_005261.1 + 126495 0.66 0.50469
Target:  5'- cGCCACCagcugccGCAGgCGGUcuGCCuggGCGCCc -3'
miRNA:   3'- cCGGUGGa------CGUCgGCCA--CGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 99626 0.66 0.50469
Target:  5'- cGCCGCCaGCAGgucgcCCGGgaUGCacaugCGCGCCa -3'
miRNA:   3'- cCGGUGGaCGUC-----GGCC--ACG-----GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 84155 0.66 0.50469
Target:  5'- cGGCCAcgccCCUGCcaccaCCGccGCCGCGCUa -3'
miRNA:   3'- -CCGGU----GGACGuc---GGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 28581 0.66 0.50469
Target:  5'- aGGCgCGCgaGC-GCCGGcggGCCgcccGCGCCg -3'
miRNA:   3'- -CCG-GUGgaCGuCGGCCa--CGG----CGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.