Results 1 - 20 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23613 | 3' | -64.6 | NC_005261.1 | + | 82811 | 1.04 | 0.001032 |
Target: 5'- cGGCCACCUGCAGCCGGUGCCGCGCUc -3' miRNA: 3'- -CCGGUGGACGUCGGCCACGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 101090 | 0.86 | 0.019125 |
Target: 5'- cGGCCGCCUGCAGCgCGGccGCgCGCGCCUu -3' miRNA: 3'- -CCGGUGGACGUCG-GCCa-CG-GCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 86212 | 0.85 | 0.023611 |
Target: 5'- cGGCgCGCCgaaccgggGCAGCCGGUGCCGCaGCCg -3' miRNA: 3'- -CCG-GUGGa-------CGUCGGCCACGGCG-CGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 12190 | 0.82 | 0.044258 |
Target: 5'- cGCCACCaUGCAgcgccgccGCCGGUGCCGcCGCCg -3' miRNA: 3'- cCGGUGG-ACGU--------CGGCCACGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 59575 | 0.82 | 0.03785 |
Target: 5'- cGCgCGCC-GCAGCgGGUGCCGCGCCg -3' miRNA: 3'- cCG-GUGGaCGUCGgCCACGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 120001 | 0.82 | 0.043121 |
Target: 5'- aGGgCGCCggcuacGCGGCCGuGUGCCGCGCCg -3' miRNA: 3'- -CCgGUGGa-----CGUCGGC-CACGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 51802 | 0.8 | 0.060249 |
Target: 5'- uGGCCAUgcucgugCUGCGGCUGGUG-CGCGCCUg -3' miRNA: 3'- -CCGGUG-------GACGUCGGCCACgGCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 33356 | 0.8 | 0.05308 |
Target: 5'- cGCCACC-GCcGCCGG-GCCGCGCCg -3' miRNA: 3'- cCGGUGGaCGuCGGCCaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 133836 | 0.8 | 0.054332 |
Target: 5'- cGGCCGCgUGCgcgccguGGCCGGcgcgcgcgacUGCCGCGCCUa -3' miRNA: 3'- -CCGGUGgACG-------UCGGCC----------ACGGCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 77056 | 0.79 | 0.068704 |
Target: 5'- cGGCgACCgcGCcuGGCCGGUGCCGCGCg- -3' miRNA: 3'- -CCGgUGGa-CG--UCGGCCACGGCGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 33386 | 0.79 | 0.07049 |
Target: 5'- gGGCCGCC-GCAGCCGccGCCGCaGCCg -3' miRNA: 3'- -CCGGUGGaCGUCGGCcaCGGCG-CGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 21793 | 0.79 | 0.068704 |
Target: 5'- gGGCCGCC-GCAGCCGccgGCCGgGCCg -3' miRNA: 3'- -CCGGUGGaCGUCGGCca-CGGCgCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 51298 | 0.78 | 0.075928 |
Target: 5'- cGGCCACCUaccucgcGCAcGCCGGcGCCGcCGCCg -3' miRNA: 3'- -CCGGUGGA-------CGU-CGGCCaCGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 50333 | 0.78 | 0.080114 |
Target: 5'- -uCCACCUGCAccagcagccGCCGGUagGCCGCGCCc -3' miRNA: 3'- ccGGUGGACGU---------CGGCCA--CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 129204 | 0.77 | 0.098168 |
Target: 5'- uGGCgCAgCUGCuucuGCUGGUGCgGCGCCUc -3' miRNA: 3'- -CCG-GUgGACGu---CGGCCACGgCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 81274 | 0.77 | 0.093323 |
Target: 5'- cGGCCGCCUGCgcgAGCCGGagcGCgGCGCg- -3' miRNA: 3'- -CCGGUGGACG---UCGGCCa--CGgCGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 2795 | 0.76 | 0.111338 |
Target: 5'- uGCCGCCgGCGGCCGGgagggGCCGgGCg- -3' miRNA: 3'- cCGGUGGaCGUCGGCCa----CGGCgCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 106226 | 0.76 | 0.111338 |
Target: 5'- cGGCCGCCUggcGCGGCC---GCCGCGCCc -3' miRNA: 3'- -CCGGUGGA---CGUCGGccaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 102815 | 0.76 | 0.10325 |
Target: 5'- aGCCGCC-GCGcGCCGGUcugcgccucgcGCCGCGCCa -3' miRNA: 3'- cCGGUGGaCGU-CGGCCA-----------CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 42681 | 0.76 | 0.111338 |
Target: 5'- gGGCCGCCgccgGCAGCCGcGcgGCCGCcagcuGCCg -3' miRNA: 3'- -CCGGUGGa---CGUCGGC-Ca-CGGCG-----CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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