Results 21 - 40 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23613 | 3' | -64.6 | NC_005261.1 | + | 103443 | 0.76 | 0.120017 |
Target: 5'- cGCgCGCCUcGCGGUCGGccGCCGCGCCc -3' miRNA: 3'- cCG-GUGGA-CGUCGGCCa-CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 42366 | 0.76 | 0.114164 |
Target: 5'- uGGCCGCgcaaacguaCUGguGCCGGcccaGCUGCGCCUg -3' miRNA: 3'- -CCGGUG---------GACguCGGCCa---CGGCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 33456 | 0.76 | 0.120017 |
Target: 5'- aGCCGCCgccGCAGCCGccGCCGCaGCCg -3' miRNA: 3'- cCGGUGGa--CGUCGGCcaCGGCG-CGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 102815 | 0.76 | 0.10325 |
Target: 5'- aGCCGCC-GCGcGCCGGUcugcgccucgcGCCGCGCCa -3' miRNA: 3'- cCGGUGGaCGU-CGGCCA-----------CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 42681 | 0.76 | 0.111338 |
Target: 5'- gGGCCGCCgccgGCAGCCGcGcgGCCGCcagcuGCCg -3' miRNA: 3'- -CCGGUGGa---CGUCGGC-Ca-CGGCG-----CGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 103398 | 0.76 | 0.114164 |
Target: 5'- cGGCCGCCUGCGccuccagcuccGCgCGG-GCCGCgGCCa -3' miRNA: 3'- -CCGGUGGACGU-----------CG-GCCaCGGCG-CGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 2795 | 0.76 | 0.111338 |
Target: 5'- uGCCGCCgGCGGCCGGgagggGCCGgGCg- -3' miRNA: 3'- cCGGUGGaCGUCGGCCa----CGGCgCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 106226 | 0.76 | 0.111338 |
Target: 5'- cGGCCGCCUggcGCGGCC---GCCGCGCCc -3' miRNA: 3'- -CCGGUGGA---CGUCGGccaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 29550 | 0.75 | 0.129322 |
Target: 5'- gGGCCcggACCUGCAGCUGG---CGCGCCUg -3' miRNA: 3'- -CCGG---UGGACGUCGGCCacgGCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 93822 | 0.75 | 0.126149 |
Target: 5'- cGCCACCgccGCAGCCGccggGCgGCGCCg -3' miRNA: 3'- cCGGUGGa--CGUCGGCca--CGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 3373 | 0.75 | 0.129322 |
Target: 5'- gGGCCGCgaGCgcGGCCGccaGCCGCGCCg -3' miRNA: 3'- -CCGGUGgaCG--UCGGCca-CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 90781 | 0.75 | 0.135891 |
Target: 5'- aGGCCGCUgcgGCGGCCGGcGC-GCGCUa -3' miRNA: 3'- -CCGGUGGa--CGUCGGCCaCGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 50186 | 0.75 | 0.123048 |
Target: 5'- cGCCGCa-GCAGCCGGUGCagcaGCGCg- -3' miRNA: 3'- cCGGUGgaCGUCGGCCACGg---CGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 3535 | 0.75 | 0.123048 |
Target: 5'- cGGCCGCCUcggcgcgcagcGCGGCgGGcGCgGCGCCg -3' miRNA: 3'- -CCGGUGGA-----------CGUCGgCCaCGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 2259 | 0.75 | 0.126149 |
Target: 5'- aGGCCGCCgGCGcucguccucGCCGG-GCgGCGCCg -3' miRNA: 3'- -CCGGUGGaCGU---------CGGCCaCGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 43345 | 0.75 | 0.135556 |
Target: 5'- uGGCUcguguGCCUGgGGCUGGUGCCGCugcggcggcaucgGCCUc -3' miRNA: 3'- -CCGG-----UGGACgUCGGCCACGGCG-------------CGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 117931 | 0.74 | 0.161363 |
Target: 5'- aGGCCGgCUGCGGCCcGUGC-GCGCUc -3' miRNA: 3'- -CCGGUgGACGUCGGcCACGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 127835 | 0.74 | 0.161363 |
Target: 5'- cGGCCGCgaGCAGCggacggggCGGUcGCgGCGCCa -3' miRNA: 3'- -CCGGUGgaCGUCG--------GCCA-CGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 45385 | 0.74 | 0.152925 |
Target: 5'- gGGCCGCCcuguucgUGCAGCUGucGUGCCugcugcgGCGCCUg -3' miRNA: 3'- -CCGGUGG-------ACGUCGGC--CACGG-------CGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 77972 | 0.74 | 0.146322 |
Target: 5'- -aCCACCUGCccccagcGCCcGUGCCGUGCCUg -3' miRNA: 3'- ccGGUGGACGu------CGGcCACGGCGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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