miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 109792 0.73 0.182115
Target:  5'- cGGCCGCugCUGCgacGGCCGGcGCCGCuuccGCCg -3'
miRNA:   3'- -CCGGUG--GACG---UCGGCCaCGGCG----CGGa -5'
23613 3' -64.6 NC_005261.1 + 37919 0.72 0.205194
Target:  5'- cGCCACCgcUGCGcgaguacgagcGCCGGaGCCGCGUCg -3'
miRNA:   3'- cCGGUGG--ACGU-----------CGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29801 0.72 0.200384
Target:  5'- aGGCCggcGCCgGCGGCgCGGgcgcCCGCGCCg -3'
miRNA:   3'- -CCGG---UGGaCGUCG-GCCac--GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 4380 0.72 0.197545
Target:  5'- cGCCGCCgaagcgcacGCGGCCGGgcggcggcggcgcgcUGCCGgGCCa -3'
miRNA:   3'- cCGGUGGa--------CGUCGGCC---------------ACGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 111259 0.72 0.20374
Target:  5'- aGGCCACCUGCcGCugagagcgagcaccCGGc-CCGCGCCUu -3'
miRNA:   3'- -CCGGUGGACGuCG--------------GCCacGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 100711 0.72 0.200384
Target:  5'- cGCCGCCcG-AGCCGcG-GCCGCGCCg -3'
miRNA:   3'- cCGGUGGaCgUCGGC-CaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 137796 0.72 0.205194
Target:  5'- cGCCGCCcGC-GCCGGcGCCGCcCCUg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCGGCGcGGA- -5'
23613 3' -64.6 NC_005261.1 + 113 0.72 0.205194
Target:  5'- cGCCGCCcGC-GCCGGcGCCGCcCCUg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCGGCGcGGA- -5'
23613 3' -64.6 NC_005261.1 + 61031 0.72 0.200384
Target:  5'- gGGCggCACCgcgGCAGCUggcuGGUGCUGgGCCUg -3'
miRNA:   3'- -CCG--GUGGa--CGUCGG----CCACGGCgCGGA- -5'
23613 3' -64.6 NC_005261.1 + 129310 0.72 0.210103
Target:  5'- cGCCccgcGCCUGC-GCUGGcGCCGCGUCg -3'
miRNA:   3'- cCGG----UGGACGuCGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 88161 0.72 0.196139
Target:  5'- cGGCCGC--GCAGCCGGgccggggcgacgccgGCgGCGCCg -3'
miRNA:   3'- -CCGGUGgaCGUCGGCCa--------------CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 109053 0.72 0.215114
Target:  5'- cGGCCGCCagGUAGCCca-GCgGCGCCUc -3'
miRNA:   3'- -CCGGUGGa-CGUCGGccaCGgCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 103271 0.72 0.215114
Target:  5'- aGCCGCUccaGCGcGCCgGGUGCCGCGCg- -3'
miRNA:   3'- cCGGUGGa--CGU-CGG-CCACGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 2690 0.72 0.220226
Target:  5'- cGGCgCGCCgGCuuuuGGCCGGcGCCGgGCCc -3'
miRNA:   3'- -CCG-GUGGaCG----UCGGCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 130831 0.72 0.214608
Target:  5'- aGGCCACCgugcgcucaaccuUGCgcgcgcgcccGGCCGGgcGCCGCgGCCUg -3'
miRNA:   3'- -CCGGUGG-------------ACG----------UCGGCCa-CGGCG-CGGA- -5'
23613 3' -64.6 NC_005261.1 + 182 0.72 0.205194
Target:  5'- cGCC-CCUGguGCucccggggccagCGGUGCCGcCGCCg -3'
miRNA:   3'- cCGGuGGACguCG------------GCCACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 137865 0.72 0.205194
Target:  5'- cGCC-CCUGguGCucccggggccagCGGUGCCGcCGCCg -3'
miRNA:   3'- cCGGuGGACguCG------------GCCACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 44288 0.72 0.220226
Target:  5'- cGCCGCCaGCGGCgGGccaggGCCGCuGCCc -3'
miRNA:   3'- cCGGUGGaCGUCGgCCa----CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 123902 0.72 0.200384
Target:  5'- aGGCCGCCgcuguggggUGCGGCCcgagcaGGUGC-GCGCCc -3'
miRNA:   3'- -CCGGUGG---------ACGUCGG------CCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 12623 0.72 0.200384
Target:  5'- cGCCACCacggUGUAGuCCGGcgcggucugggGCCGCGCCg -3'
miRNA:   3'- cCGGUGG----ACGUC-GGCCa----------CGGCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.