miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 82811 1.04 0.001032
Target:  5'- cGGCCACCUGCAGCCGGUGCCGCGCUc -3'
miRNA:   3'- -CCGGUGGACGUCGGCCACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 101090 0.86 0.019125
Target:  5'- cGGCCGCCUGCAGCgCGGccGCgCGCGCCUu -3'
miRNA:   3'- -CCGGUGGACGUCG-GCCa-CG-GCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 86212 0.85 0.023611
Target:  5'- cGGCgCGCCgaaccgggGCAGCCGGUGCCGCaGCCg -3'
miRNA:   3'- -CCG-GUGGa-------CGUCGGCCACGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 59575 0.82 0.03785
Target:  5'- cGCgCGCC-GCAGCgGGUGCCGCGCCg -3'
miRNA:   3'- cCG-GUGGaCGUCGgCCACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 120001 0.82 0.043121
Target:  5'- aGGgCGCCggcuacGCGGCCGuGUGCCGCGCCg -3'
miRNA:   3'- -CCgGUGGa-----CGUCGGC-CACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 12190 0.82 0.044258
Target:  5'- cGCCACCaUGCAgcgccgccGCCGGUGCCGcCGCCg -3'
miRNA:   3'- cCGGUGG-ACGU--------CGGCCACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 33356 0.8 0.05308
Target:  5'- cGCCACC-GCcGCCGG-GCCGCGCCg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 133836 0.8 0.054332
Target:  5'- cGGCCGCgUGCgcgccguGGCCGGcgcgcgcgacUGCCGCGCCUa -3'
miRNA:   3'- -CCGGUGgACG-------UCGGCC----------ACGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 51802 0.8 0.060249
Target:  5'- uGGCCAUgcucgugCUGCGGCUGGUG-CGCGCCUg -3'
miRNA:   3'- -CCGGUG-------GACGUCGGCCACgGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 21793 0.79 0.068704
Target:  5'- gGGCCGCC-GCAGCCGccgGCCGgGCCg -3'
miRNA:   3'- -CCGGUGGaCGUCGGCca-CGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 77056 0.79 0.068704
Target:  5'- cGGCgACCgcGCcuGGCCGGUGCCGCGCg- -3'
miRNA:   3'- -CCGgUGGa-CG--UCGGCCACGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 33386 0.79 0.07049
Target:  5'- gGGCCGCC-GCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- -CCGGUGGaCGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 51298 0.78 0.075928
Target:  5'- cGGCCACCUaccucgcGCAcGCCGGcGCCGcCGCCg -3'
miRNA:   3'- -CCGGUGGA-------CGU-CGGCCaCGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 50333 0.78 0.080114
Target:  5'- -uCCACCUGCAccagcagccGCCGGUagGCCGCGCCc -3'
miRNA:   3'- ccGGUGGACGU---------CGGCCA--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 81274 0.77 0.093323
Target:  5'- cGGCCGCCUGCgcgAGCCGGagcGCgGCGCg- -3'
miRNA:   3'- -CCGGUGGACG---UCGGCCa--CGgCGCGga -5'
23613 3' -64.6 NC_005261.1 + 129204 0.77 0.098168
Target:  5'- uGGCgCAgCUGCuucuGCUGGUGCgGCGCCUc -3'
miRNA:   3'- -CCG-GUgGACGu---CGGCCACGgCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 102815 0.76 0.10325
Target:  5'- aGCCGCC-GCGcGCCGGUcugcgccucgcGCCGCGCCa -3'
miRNA:   3'- cCGGUGGaCGU-CGGCCA-----------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 106226 0.76 0.111338
Target:  5'- cGGCCGCCUggcGCGGCC---GCCGCGCCc -3'
miRNA:   3'- -CCGGUGGA---CGUCGGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 2795 0.76 0.111338
Target:  5'- uGCCGCCgGCGGCCGGgagggGCCGgGCg- -3'
miRNA:   3'- cCGGUGGaCGUCGGCCa----CGGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 42681 0.76 0.111338
Target:  5'- gGGCCGCCgccgGCAGCCGcGcgGCCGCcagcuGCCg -3'
miRNA:   3'- -CCGGUGGa---CGUCGGC-Ca-CGGCG-----CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.