miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 101860 0.76 0.113026
Target:  5'- cGGCCGCCUGCAGCacguccgcgcgcaGGgcgcccaGCCGCGCg- -3'
miRNA:   3'- -CCGGUGGACGUCGg------------CCa------CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 42366 0.76 0.114164
Target:  5'- uGGCCGCgcaaacguaCUGguGCCGGcccaGCUGCGCCUg -3'
miRNA:   3'- -CCGGUG---------GACguCGGCCa---CGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 103398 0.76 0.114164
Target:  5'- cGGCCGCCUGCGccuccagcuccGCgCGG-GCCGCgGCCa -3'
miRNA:   3'- -CCGGUGGACGU-----------CG-GCCaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 1494 0.76 0.117057
Target:  5'- aGGCCACCgccGCGGCCGGcaGCUcgucggGCGCCa -3'
miRNA:   3'- -CCGGUGGa--CGUCGGCCa-CGG------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 33420 0.76 0.120017
Target:  5'- aGCCGCCgccGCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 33456 0.76 0.120017
Target:  5'- aGCCGCCgccGCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 103443 0.76 0.120017
Target:  5'- cGCgCGCCUcGCGGUCGGccGCCGCGCCc -3'
miRNA:   3'- cCG-GUGGA-CGUCGGCCa-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118884 0.76 0.120017
Target:  5'- cGGCCACCgcggGCGcGCUGGUgGCCuGCGUCUg -3'
miRNA:   3'- -CCGGUGGa---CGU-CGGCCA-CGG-CGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 3535 0.75 0.123048
Target:  5'- cGGCCGCCUcggcgcgcagcGCGGCgGGcGCgGCGCCg -3'
miRNA:   3'- -CCGGUGGA-----------CGUCGgCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 50186 0.75 0.123048
Target:  5'- cGCCGCa-GCAGCCGGUGCagcaGCGCg- -3'
miRNA:   3'- cCGGUGgaCGUCGGCCACGg---CGCGga -5'
23613 3' -64.6 NC_005261.1 + 93822 0.75 0.126149
Target:  5'- cGCCACCgccGCAGCCGccggGCgGCGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCGGCca--CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 2259 0.75 0.126149
Target:  5'- aGGCCGCCgGCGcucguccucGCCGG-GCgGCGCCg -3'
miRNA:   3'- -CCGGUGGaCGU---------CGGCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 3373 0.75 0.129322
Target:  5'- gGGCCGCgaGCgcGGCCGccaGCCGCGCCg -3'
miRNA:   3'- -CCGGUGgaCG--UCGGCca-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29550 0.75 0.129322
Target:  5'- gGGCCcggACCUGCAGCUGG---CGCGCCUg -3'
miRNA:   3'- -CCGG---UGGACGUCGGCCacgGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 43345 0.75 0.135556
Target:  5'- uGGCUcguguGCCUGgGGCUGGUGCCGCugcggcggcaucgGCCUc -3'
miRNA:   3'- -CCGG-----UGGACgUCGGCCACGGCG-------------CGGA- -5'
23613 3' -64.6 NC_005261.1 + 90781 0.75 0.135891
Target:  5'- aGGCCGCUgcgGCGGCCGGcGC-GCGCUa -3'
miRNA:   3'- -CCGGUGGa--CGUCGGCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 86867 0.74 0.142766
Target:  5'- cGCCGCCgggcgcgGCGGCCuugGCCGCGCCc -3'
miRNA:   3'- cCGGUGGa------CGUCGGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 77972 0.74 0.146322
Target:  5'- -aCCACCUGCccccagcGCCcGUGCCGUGCCUg -3'
miRNA:   3'- ccGGUGGACGu------CGGcCACGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 28860 0.74 0.146322
Target:  5'- uGGCCGCCgcccuugaggcUGCGGCgCGGacGCCGCcGCCUg -3'
miRNA:   3'- -CCGGUGG-----------ACGUCG-GCCa-CGGCG-CGGA- -5'
23613 3' -64.6 NC_005261.1 + 38922 0.74 0.146322
Target:  5'- gGGCCcgcgcgccaaGCCgGCGGCCGGgcggGCCGCGgCg -3'
miRNA:   3'- -CCGG----------UGGaCGUCGGCCa---CGGCGCgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.