miRNA display CGI


Results 41 - 60 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 33953 0.74 0.149958
Target:  5'- cGCCGCCUGUcGCUGGaccuucUGCCGcCGCCg -3'
miRNA:   3'- cCGGUGGACGuCGGCC------ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 97189 0.74 0.149958
Target:  5'- cGGCCggGCC-GCGGCCGGaagcGCCGCgGCCa -3'
miRNA:   3'- -CCGG--UGGaCGUCGGCCa---CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 101432 0.74 0.149958
Target:  5'- cGGCCGCCgagGCGGCgCGGUccagcgcugGCCccaGCGCCg -3'
miRNA:   3'- -CCGGUGGa--CGUCG-GCCA---------CGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 45385 0.74 0.152925
Target:  5'- gGGCCGCCcuguucgUGCAGCUGucGUGCCugcugcgGCGCCUg -3'
miRNA:   3'- -CCGGUGG-------ACGUCGGC--CACGG-------CGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 62987 0.74 0.157477
Target:  5'- uGGCCcuCCUcCAGCCGGcccucggcgGCCGCGCCc -3'
miRNA:   3'- -CCGGu-GGAcGUCGGCCa--------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 127835 0.74 0.161363
Target:  5'- cGGCCGCgaGCAGCggacggggCGGUcGCgGCGCCa -3'
miRNA:   3'- -CCGGUGgaCGUCG--------GCCA-CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 117931 0.74 0.161363
Target:  5'- aGGCCGgCUGCGGCCcGUGC-GCGCUc -3'
miRNA:   3'- -CCGGUgGACGUCGGcCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 7613 0.73 0.164135
Target:  5'- cGGCCGCuggaucugccucugCUGCcGCCGcUGCCGCGUCUg -3'
miRNA:   3'- -CCGGUG--------------GACGuCGGCcACGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 86465 0.73 0.165336
Target:  5'- uGGCCcgcGCCguugauggacGCGGCCGG-GCCGgCGCCUg -3'
miRNA:   3'- -CCGG---UGGa---------CGUCGGCCaCGGC-GCGGA- -5'
23613 3' -64.6 NC_005261.1 + 34472 0.73 0.17229
Target:  5'- gGGCCccguACCUGCGGCgGGUGCUggagugggucgaggGCGCUc -3'
miRNA:   3'- -CCGG----UGGACGUCGgCCACGG--------------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118630 0.73 0.173545
Target:  5'- uGGCCGCCgcgGCGGCgcucugggcccCGG-GCCGCGCgCUc -3'
miRNA:   3'- -CCGGUGGa--CGUCG-----------GCCaCGGCGCG-GA- -5'
23613 3' -64.6 NC_005261.1 + 30196 0.73 0.173545
Target:  5'- cGGCCGCC-GC-GCUGGaggcgGCCGCGCUg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCCa----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 88438 0.73 0.177784
Target:  5'- gGGCCACC-GCuGCUG--GCCGCGCCg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 62430 0.73 0.177784
Target:  5'- aGGCCAgC-GCgAGCCGGUcGCCGgGCCc -3'
miRNA:   3'- -CCGGUgGaCG-UCGGCCA-CGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 29862 0.73 0.177784
Target:  5'- cGGCCGCgCgGC-GCCGGcGCCGCuGCCg -3'
miRNA:   3'- -CCGGUG-GaCGuCGGCCaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 75042 0.73 0.177784
Target:  5'- cGGCCgACCUGCuGGCCauGGUGUacaccgcgCGCGCCg -3'
miRNA:   3'- -CCGG-UGGACG-UCGG--CCACG--------GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 102538 0.73 0.182115
Target:  5'- uGGCCGCCUGCGGCCccaGGcGCCcggcggacacCGCCUc -3'
miRNA:   3'- -CCGGUGGACGUCGG---CCaCGGc---------GCGGA- -5'
23613 3' -64.6 NC_005261.1 + 118063 0.73 0.182115
Target:  5'- cGGCCGCggcaGCGGCCGcaGCCGCGCUc -3'
miRNA:   3'- -CCGGUGga--CGUCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 109792 0.73 0.182115
Target:  5'- cGGCCGCugCUGCgacGGCCGGcGCCGCuuccGCCg -3'
miRNA:   3'- -CCGGUG--GACG---UCGGCCaCGGCG----CGGa -5'
23613 3' -64.6 NC_005261.1 + 123500 0.73 0.186539
Target:  5'- gGGCgCACCaGCGGCa-GUGCCGCGUCc -3'
miRNA:   3'- -CCG-GUGGaCGUCGgcCACGGCGCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.