Results 61 - 80 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23613 | 3' | -64.6 | NC_005261.1 | + | 63955 | 0.73 | 0.191058 |
Target: 5'- aGCC-CCgugcGCAGCUGGUGCgucaGCGCCa -3' miRNA: 3'- cCGGuGGa---CGUCGGCCACGg---CGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 46982 | 0.72 | 0.195672 |
Target: 5'- cGCCGCCcgccgGCAGCgCGc-GCCGCGCCg -3' miRNA: 3'- cCGGUGGa----CGUCG-GCcaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 88161 | 0.72 | 0.196139 |
Target: 5'- cGGCCGC--GCAGCCGGgccggggcgacgccgGCgGCGCCg -3' miRNA: 3'- -CCGGUGgaCGUCGGCCa--------------CGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 4380 | 0.72 | 0.197545 |
Target: 5'- cGCCGCCgaagcgcacGCGGCCGGgcggcggcggcgcgcUGCCGgGCCa -3' miRNA: 3'- cCGGUGGa--------CGUCGGCC---------------ACGGCgCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 12623 | 0.72 | 0.200384 |
Target: 5'- cGCCACCacggUGUAGuCCGGcgcggucugggGCCGCGCCg -3' miRNA: 3'- cCGGUGG----ACGUC-GGCCa----------CGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 61031 | 0.72 | 0.200384 |
Target: 5'- gGGCggCACCgcgGCAGCUggcuGGUGCUGgGCCUg -3' miRNA: 3'- -CCG--GUGGa--CGUCGG----CCACGGCgCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 100711 | 0.72 | 0.200384 |
Target: 5'- cGCCGCCcG-AGCCGcG-GCCGCGCCg -3' miRNA: 3'- cCGGUGGaCgUCGGC-CaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 123902 | 0.72 | 0.200384 |
Target: 5'- aGGCCGCCgcuguggggUGCGGCCcgagcaGGUGC-GCGCCc -3' miRNA: 3'- -CCGGUGG---------ACGUCGG------CCACGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 29801 | 0.72 | 0.200384 |
Target: 5'- aGGCCggcGCCgGCGGCgCGGgcgcCCGCGCCg -3' miRNA: 3'- -CCGG---UGGaCGUCG-GCCac--GGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 111259 | 0.72 | 0.20374 |
Target: 5'- aGGCCACCUGCcGCugagagcgagcaccCGGc-CCGCGCCUu -3' miRNA: 3'- -CCGGUGGACGuCG--------------GCCacGGCGCGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 182 | 0.72 | 0.205194 |
Target: 5'- cGCC-CCUGguGCucccggggccagCGGUGCCGcCGCCg -3' miRNA: 3'- cCGGuGGACguCG------------GCCACGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 137796 | 0.72 | 0.205194 |
Target: 5'- cGCCGCCcGC-GCCGGcGCCGCcCCUg -3' miRNA: 3'- cCGGUGGaCGuCGGCCaCGGCGcGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 113 | 0.72 | 0.205194 |
Target: 5'- cGCCGCCcGC-GCCGGcGCCGCcCCUg -3' miRNA: 3'- cCGGUGGaCGuCGGCCaCGGCGcGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 37919 | 0.72 | 0.205194 |
Target: 5'- cGCCACCgcUGCGcgaguacgagcGCCGGaGCCGCGUCg -3' miRNA: 3'- cCGGUGG--ACGU-----------CGGCCaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 100926 | 0.72 | 0.205194 |
Target: 5'- cGUCGCCUGCAGCCGcugcagGCCcGCGUCc -3' miRNA: 3'- cCGGUGGACGUCGGCca----CGG-CGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 137865 | 0.72 | 0.205194 |
Target: 5'- cGCC-CCUGguGCucccggggccagCGGUGCCGcCGCCg -3' miRNA: 3'- cCGGuGGACguCG------------GCCACGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 129310 | 0.72 | 0.210103 |
Target: 5'- cGCCccgcGCCUGC-GCUGGcGCCGCGUCg -3' miRNA: 3'- cCGG----UGGACGuCGGCCaCGGCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 87066 | 0.72 | 0.214103 |
Target: 5'- cGCCACC-GCGGCCGGgcccagcacguaGCCGUGCa- -3' miRNA: 3'- cCGGUGGaCGUCGGCCa-----------CGGCGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 130831 | 0.72 | 0.214608 |
Target: 5'- aGGCCACCgugcgcucaaccuUGCgcgcgcgcccGGCCGGgcGCCGCgGCCUg -3' miRNA: 3'- -CCGGUGG-------------ACG----------UCGGCCa-CGGCG-CGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 103271 | 0.72 | 0.215114 |
Target: 5'- aGCCGCUccaGCGcGCCgGGUGCCGCGCg- -3' miRNA: 3'- cCGGUGGa--CGU-CGG-CCACGGCGCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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