miRNA display CGI


Results 81 - 100 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 103271 0.72 0.215114
Target:  5'- aGCCGCUccaGCGcGCCgGGUGCCGCGCg- -3'
miRNA:   3'- cCGGUGGa--CGU-CGG-CCACGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 44288 0.72 0.220226
Target:  5'- cGCCGCCaGCGGCgGGccaggGCCGCuGCCc -3'
miRNA:   3'- cCGGUGGaCGUCGgCCa----CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 2690 0.72 0.220226
Target:  5'- cGGCgCGCCgGCuuuuGGCCGGcGCCGgGCCc -3'
miRNA:   3'- -CCG-GUGGaCG----UCGGCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 120640 0.71 0.225442
Target:  5'- cGGCCcuguGCCUGCGGCgcaaGGcgcgGgCGCGCCUg -3'
miRNA:   3'- -CCGG----UGGACGUCGg---CCa---CgGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 14975 0.71 0.225442
Target:  5'- gGGCgACUgcGCGGCCGcGccgGCCGCGCCc -3'
miRNA:   3'- -CCGgUGGa-CGUCGGC-Ca--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 107827 0.71 0.225442
Target:  5'- cGGCCGCCgccGCcucuGcCCGGUcGCCGcCGCCg -3'
miRNA:   3'- -CCGGUGGa--CGu---C-GGCCA-CGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 1174 0.71 0.230762
Target:  5'- cGGCCcgcGCC-GCGGCCGGgGCCgGgGCCg -3'
miRNA:   3'- -CCGG---UGGaCGUCGGCCaCGG-CgCGGa -5'
23613 3' -64.6 NC_005261.1 + 11918 0.71 0.236188
Target:  5'- cGGCCcgGCCgGCGGCUGcGgcgGcCCGCGCCg -3'
miRNA:   3'- -CCGG--UGGaCGUCGGC-Ca--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 32154 0.71 0.236188
Target:  5'- cGGCgCGCCgcUGCGGCCGGUGUaccUG-GCCUg -3'
miRNA:   3'- -CCG-GUGG--ACGUCGGCCACG---GCgCGGA- -5'
23613 3' -64.6 NC_005261.1 + 64469 0.71 0.236188
Target:  5'- uGGCCACCagguucgccgggUGCAGCgGGUGgCGCGg-- -3'
miRNA:   3'- -CCGGUGG------------ACGUCGgCCACgGCGCgga -5'
23613 3' -64.6 NC_005261.1 + 84284 0.71 0.236188
Target:  5'- uGCCGCCgGCGGCCccGGccccgGCgGCGCCg -3'
miRNA:   3'- cCGGUGGaCGUCGG--CCa----CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 38598 0.71 0.241721
Target:  5'- uGGCgGCCcGCGGCUGGcggguguugGCCGCgGCCg -3'
miRNA:   3'- -CCGgUGGaCGUCGGCCa--------CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 34349 0.71 0.241721
Target:  5'- gGGCgGCCgacGgGGCCGGgcGCCGCGCg- -3'
miRNA:   3'- -CCGgUGGa--CgUCGGCCa-CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 1407 0.71 0.241721
Target:  5'- cGGCCGCggcgGCGGCgGGgGCgGCGCCc -3'
miRNA:   3'- -CCGGUGga--CGUCGgCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 44239 0.71 0.241721
Target:  5'- uGGCCGCCcagcgcGCGGCCGacGCCGCGgCg -3'
miRNA:   3'- -CCGGUGGa-----CGUCGGCcaCGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 36755 0.71 0.24736
Target:  5'- aGGCCAgcuggcgccCCUGCAcGCCGGcccgUGCguUGCGCCg -3'
miRNA:   3'- -CCGGU---------GGACGU-CGGCC----ACG--GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 101024 0.71 0.24736
Target:  5'- cGCCugUgaacGCGGCCGGcaGCCGCGCg- -3'
miRNA:   3'- cCGGugGa---CGUCGGCCa-CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 131867 0.71 0.24736
Target:  5'- cGGCUGCUUG-AGCUGGcgGCCGcCGCCg -3'
miRNA:   3'- -CCGGUGGACgUCGGCCa-CGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 136486 0.71 0.24736
Target:  5'- gGGCagcaGCgaGCAGCuCGGcGCCGaCGCCUg -3'
miRNA:   3'- -CCGg---UGgaCGUCG-GCCaCGGC-GCGGA- -5'
23613 3' -64.6 NC_005261.1 + 83072 0.71 0.24736
Target:  5'- cGCCcCCgcgGCGGCCGGcGCUuccaGCGCCUc -3'
miRNA:   3'- cCGGuGGa--CGUCGGCCaCGG----CGCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.