miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 84155 0.66 0.50469
Target:  5'- cGGCCAcgccCCUGCcaccaCCGccGCCGCGCUa -3'
miRNA:   3'- -CCGGU----GGACGuc---GGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 83757 0.66 0.50469
Target:  5'- cGGCgCGCCa-CGGCCGGgucGCaGCGCCc -3'
miRNA:   3'- -CCG-GUGGacGUCGGCCa--CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 96131 0.66 0.503764
Target:  5'- uGGUCgACCUGCGGCggcggcaCGagaaggccgucGUGCCGCGCg- -3'
miRNA:   3'- -CCGG-UGGACGUCG-------GC-----------CACGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 77659 0.66 0.499145
Target:  5'- cGGCCggcGCCUGCAGgcgcagggcgcggaCGG-GCCGgGCUa -3'
miRNA:   3'- -CCGG---UGGACGUCg-------------GCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 59286 0.66 0.495463
Target:  5'- cGCCGCCcaGCAGCgCGcaGUGCCccGCGUCa -3'
miRNA:   3'- cCGGUGGa-CGUCG-GC--CACGG--CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 45617 0.66 0.495463
Target:  5'- cGGCgGCgCggcGCGGCgCGGcggGcCCGCGCCg -3'
miRNA:   3'- -CCGgUG-Ga--CGUCG-GCCa--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29260 0.66 0.495463
Target:  5'- gGGCCGCC-GCcGCUGGaggGCC-CGCUg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCCa--CGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 87257 0.66 0.495463
Target:  5'- cGcCCACUUGCA--CGGUcGUCGCGCCg -3'
miRNA:   3'- cC-GGUGGACGUcgGCCA-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 64263 0.66 0.495463
Target:  5'- cGCCAUCaucaGCAcGCCguGGUGCaGCGCCg -3'
miRNA:   3'- cCGGUGGa---CGU-CGG--CCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 44716 0.66 0.495463
Target:  5'- cGGCUgacgcgcgcaggGCgCUGCAGCUGGgccccgaGCUGCGCg- -3'
miRNA:   3'- -CCGG------------UG-GACGUCGGCCa------CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 106039 0.66 0.495463
Target:  5'- cGCCACCgcGCuGcCCGGcccuagcGCCGCGUCg -3'
miRNA:   3'- cCGGUGGa-CGuC-GGCCa------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 121780 0.66 0.495463
Target:  5'- gGGUgGCC-GCGGCCGGcggGCUGgGCa- -3'
miRNA:   3'- -CCGgUGGaCGUCGGCCa--CGGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 109231 0.66 0.495463
Target:  5'- cGCCGCgcgCUGCAGCgCGGcccagUGCgGgGCCa -3'
miRNA:   3'- cCGGUG---GACGUCG-GCC-----ACGgCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 107688 0.66 0.495463
Target:  5'- uGCCGCC-GCGGCgGG-GgCGcCGCCg -3'
miRNA:   3'- cCGGUGGaCGUCGgCCaCgGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 83488 0.66 0.495463
Target:  5'- cGCCGCCguagaGC-GCCaGGcGCgCGCGCCg -3'
miRNA:   3'- cCGGUGGa----CGuCGG-CCaCG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 44033 0.66 0.495463
Target:  5'- cGGCCGCCgcgcgGCGGCCGcG-GgCGgGCa- -3'
miRNA:   3'- -CCGGUGGa----CGUCGGC-CaCgGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 32313 0.66 0.495463
Target:  5'- cGCCGCCgccGCGGCC---GCgGCGCCc -3'
miRNA:   3'- cCGGUGGa--CGUCGGccaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 20649 0.66 0.495463
Target:  5'- cGCCGCCcGCAccGCCGGUGgCG-GCa- -3'
miRNA:   3'- cCGGUGGaCGU--CGGCCACgGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 84958 0.66 0.486313
Target:  5'- cGGCCGCCgagGC-GUCGG-GCgcguccgcgaUGCGCCg -3'
miRNA:   3'- -CCGGUGGa--CGuCGGCCaCG----------GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 39335 0.66 0.486313
Target:  5'- cGCCGCC-GCGGCCaa-GCUGCGCg- -3'
miRNA:   3'- cCGGUGGaCGUCGGccaCGGCGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.