miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 109742 0.66 0.486313
Target:  5'- -aCCACCUGCGaaugcggcucCCGGccGCCGCGUCg -3'
miRNA:   3'- ccGGUGGACGUc---------GGCCa-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 109634 0.66 0.486313
Target:  5'- aGGCgGCUUGCGGCC---GCCGCcCCa -3'
miRNA:   3'- -CCGgUGGACGUCGGccaCGGCGcGGa -5'
23613 3' -64.6 NC_005261.1 + 84888 0.66 0.486313
Target:  5'- aGGUgGCUgGCGGCgaaGGUGCC-CGCCc -3'
miRNA:   3'- -CCGgUGGaCGUCGg--CCACGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 78984 0.66 0.486313
Target:  5'- gGGCCugCUcCAGCUua-GCCGCGUCa -3'
miRNA:   3'- -CCGGugGAcGUCGGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 42080 0.66 0.486313
Target:  5'- aGCCACCaGCAGUaaacgaccgCGGUGaggaUGUGCCg -3'
miRNA:   3'- cCGGUGGaCGUCG---------GCCACg---GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 63420 0.66 0.486313
Target:  5'- cGGCguCCgacucGCcgucGCCGGcguagGCCGCGCCc -3'
miRNA:   3'- -CCGguGGa----CGu---CGGCCa----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 68115 0.66 0.486313
Target:  5'- gGGCUggagcugcgcggGCC-GCGGCgCGGcGaCCGCGCCg -3'
miRNA:   3'- -CCGG------------UGGaCGUCG-GCCaC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 102697 0.66 0.486313
Target:  5'- cGGCCGuCgCUGCcGCCGucuccGCCGCGUCc -3'
miRNA:   3'- -CCGGU-G-GACGuCGGCca---CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 84958 0.66 0.486313
Target:  5'- cGGCCGCCgagGC-GUCGG-GCgcguccgcgaUGCGCCg -3'
miRNA:   3'- -CCGGUGGa--CGuCGGCCaCG----------GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 39335 0.66 0.486313
Target:  5'- cGCCGCC-GCGGCCaa-GCUGCGCg- -3'
miRNA:   3'- cCGGUGGaCGUCGGccaCGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 16227 0.66 0.486313
Target:  5'- cGGCCAgCCcucgggGCGGUCGacGU-CCGCGCCg -3'
miRNA:   3'- -CCGGU-GGa-----CGUCGGC--CAcGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 112090 0.66 0.486313
Target:  5'- cGCCACgUGguGCgCGGUGUucaaCGCGUa- -3'
miRNA:   3'- cCGGUGgACguCG-GCCACG----GCGCGga -5'
23613 3' -64.6 NC_005261.1 + 94885 0.66 0.486313
Target:  5'- cGGcCCGCgUGCAGCCacacGCgCGCGCUg -3'
miRNA:   3'- -CC-GGUGgACGUCGGcca-CG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 71237 0.66 0.486313
Target:  5'- cGGCCcUCggcggcGCAGCCGaGccCCGCGCCg -3'
miRNA:   3'- -CCGGuGGa-----CGUCGGC-CacGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 2038 0.66 0.485402
Target:  5'- cGCCGCCgcgccGCGGCCagccgcaggcagaGGUacucGaCCGCGCCg -3'
miRNA:   3'- cCGGUGGa----CGUCGG-------------CCA----C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 47241 0.66 0.483584
Target:  5'- gGGCCccagaaagccgaggACCUGC-GCCGGcccGCCggcgaagaGCGCCg -3'
miRNA:   3'- -CCGG--------------UGGACGuCGGCCa--CGG--------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118291 0.66 0.478147
Target:  5'- cGGCCGCCgcggGCA-CCGGggcgcacuuccgcaCCGCGCUg -3'
miRNA:   3'- -CCGGUGGa---CGUcGGCCac------------GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 88588 0.66 0.477244
Target:  5'- cGCCGCCga-GGcCCGGcccgGCgGCGCCa -3'
miRNA:   3'- cCGGUGGacgUC-GGCCa---CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 71866 0.66 0.477244
Target:  5'- cGCCGCUUGCGGuCCGc--CCGCGCg- -3'
miRNA:   3'- cCGGUGGACGUC-GGCcacGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 134518 0.66 0.477244
Target:  5'- aGCCugcGCCUGCAGCUGcugGgCGCGCa- -3'
miRNA:   3'- cCGG---UGGACGUCGGCca-CgGCGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.