miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 79373 0.66 0.477244
Target:  5'- aGCU-CgUGCAGCUGGuUGCgGCGCUg -3'
miRNA:   3'- cCGGuGgACGUCGGCC-ACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 31554 0.66 0.477244
Target:  5'- cGCaCGCCUG-GGCCGGguccuggacgGgCGCGCCg -3'
miRNA:   3'- cCG-GUGGACgUCGGCCa---------CgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 59939 0.66 0.477244
Target:  5'- cGGCCAUCUcCAGCCGcagcGCgGCGCg- -3'
miRNA:   3'- -CCGGUGGAcGUCGGCca--CGgCGCGga -5'
23613 3' -64.6 NC_005261.1 + 71002 0.66 0.477244
Target:  5'- cGGCCGCCagGcCAGCUc--GCCGCGCa- -3'
miRNA:   3'- -CCGGUGGa-C-GUCGGccaCGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 93461 0.66 0.477244
Target:  5'- cGGCC-CCagcgcGguGCCGGgGCgCGCGUCg -3'
miRNA:   3'- -CCGGuGGa----CguCGGCCaCG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 92194 0.66 0.477244
Target:  5'- cGCCGCCgcuggcGCAGCCGccgaaGCCgGCGUCg -3'
miRNA:   3'- cCGGUGGa-----CGUCGGCca---CGG-CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 88588 0.66 0.477244
Target:  5'- cGCCGCCga-GGcCCGGcccgGCgGCGCCa -3'
miRNA:   3'- cCGGUGGacgUC-GGCCa---CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 71866 0.66 0.477244
Target:  5'- cGCCGCUUGCGGuCCGc--CCGCGCg- -3'
miRNA:   3'- cCGGUGGACGUC-GGCcacGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 134518 0.66 0.477244
Target:  5'- aGCCugcGCCUGCAGCUGcugGgCGCGCa- -3'
miRNA:   3'- cCGG---UGGACGUCGGCca-CgGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 121173 0.66 0.477244
Target:  5'- cGGgCGCUcggUGCacggGGCCGGgGCCGgGCCc -3'
miRNA:   3'- -CCgGUGG---ACG----UCGGCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 103605 0.66 0.477244
Target:  5'- uGGCCGCggcgGCAGCgCGGgagGCgGCGgCg -3'
miRNA:   3'- -CCGGUGga--CGUCG-GCCa--CGgCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 19404 0.66 0.46826
Target:  5'- cGGUgAUCgGC--CCGuGUGCCGCGCCg -3'
miRNA:   3'- -CCGgUGGaCGucGGC-CACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 25813 0.66 0.46826
Target:  5'- cGCCAUCUGguGgC---GCCGCGCCg -3'
miRNA:   3'- cCGGUGGACguCgGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 78850 0.66 0.46826
Target:  5'- cGGCggCGCCcGCcGCCGGagcgcgaGCCGCGUCa -3'
miRNA:   3'- -CCG--GUGGaCGuCGGCCa------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 22804 0.66 0.46826
Target:  5'- cGCgGCCgGCGGCgGcGcUGCCGcCGCCg -3'
miRNA:   3'- cCGgUGGaCGUCGgC-C-ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 57405 0.66 0.46826
Target:  5'- cGCCcgugAUCcGCGGCCGGcGCCGCgaGCCc -3'
miRNA:   3'- cCGG----UGGaCGUCGGCCaCGGCG--CGGa -5'
23613 3' -64.6 NC_005261.1 + 111301 0.66 0.46826
Target:  5'- cGCCGCCgcUGCcuccGCCGccGCCGCGCgCUc -3'
miRNA:   3'- cCGGUGG--ACGu---CGGCcaCGGCGCG-GA- -5'
23613 3' -64.6 NC_005261.1 + 114997 0.66 0.46826
Target:  5'- cGGCCGCC-GCGGCCccGGccCCGCggagGCCUc -3'
miRNA:   3'- -CCGGUGGaCGUCGG--CCacGGCG----CGGA- -5'
23613 3' -64.6 NC_005261.1 + 84665 0.66 0.46826
Target:  5'- cGCCGCCcGCGcCCGcG-GCCGCGCa- -3'
miRNA:   3'- cCGGUGGaCGUcGGC-CaCGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 98234 0.66 0.46826
Target:  5'- cGGgCAUCgauuuccGCGGcCCGGUGCgGCGCg- -3'
miRNA:   3'- -CCgGUGGa------CGUC-GGCCACGgCGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.