miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 134359 0.66 0.46826
Target:  5'- cGCCGCC-GC-GCgGGggGCgGCGCCg -3'
miRNA:   3'- cCGGUGGaCGuCGgCCa-CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 76191 0.66 0.467366
Target:  5'- gGGCCugggcguGCUgaUGCAGCa---GCCGCGCCUg -3'
miRNA:   3'- -CCGG-------UGG--ACGUCGgccaCGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 29950 0.66 0.462911
Target:  5'- cGGCCuGCCgcgaggcgcuagagGCGGCgCGGUGCgC-CGCCg -3'
miRNA:   3'- -CCGG-UGGa-------------CGUCG-GCCACG-GcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 68518 0.66 0.459362
Target:  5'- aGGCgUGCCUGCcggcgccGCCGGcGCCcgcGCGCCc -3'
miRNA:   3'- -CCG-GUGGACGu------CGGCCaCGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 73904 0.66 0.459362
Target:  5'- aGGUgaACCUGCagAGCCGGcgGCCcgacugcguGUGCCUg -3'
miRNA:   3'- -CCGg-UGGACG--UCGGCCa-CGG---------CGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 38717 0.66 0.459362
Target:  5'- aGGCCcgcgcccccagcGCCcGCAGagcCCGG-GcCCGCGCCa -3'
miRNA:   3'- -CCGG------------UGGaCGUC---GGCCaC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 67365 0.66 0.459362
Target:  5'- aGGCCGCCgGCAgcgccaccGCCGcGaagaccGCCGCGCg- -3'
miRNA:   3'- -CCGGUGGaCGU--------CGGC-Ca-----CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 44838 0.66 0.459362
Target:  5'- cGCaGCC-GCAGCCGcaGCCGCaGCCg -3'
miRNA:   3'- cCGgUGGaCGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 67278 0.66 0.459362
Target:  5'- cGGCCAgCaGCAGCCcccccgccGCCGCGCg- -3'
miRNA:   3'- -CCGGUgGaCGUCGGcca-----CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 74827 0.66 0.459362
Target:  5'- uGGCCGCCgugcucGCGGaCCuGGggagGCggCGCGCCg -3'
miRNA:   3'- -CCGGUGGa-----CGUC-GG-CCa---CG--GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 77453 0.66 0.459362
Target:  5'- aGCCAggcCCggggcGCGGCUGcaGCCGCGCCc -3'
miRNA:   3'- cCGGU---GGa----CGUCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 104377 0.66 0.459362
Target:  5'- aGCCGCCgGCcggaGGCCGaGaGgCGCGCCa -3'
miRNA:   3'- cCGGUGGaCG----UCGGC-CaCgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 107453 0.66 0.459362
Target:  5'- uGGCCACCgccccgGCA-CCGcaGUcCCGCGCCc -3'
miRNA:   3'- -CCGGUGGa-----CGUcGGC--CAcGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 75992 0.66 0.459362
Target:  5'- cGGCCGCCcucGC-GCUGGacGCCcugGCGCCg -3'
miRNA:   3'- -CCGGUGGa--CGuCGGCCa-CGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 104811 0.66 0.458478
Target:  5'- gGGUC-CCgcuccGCAGCggcgucgCGGgGCCGCGCCa -3'
miRNA:   3'- -CCGGuGGa----CGUCG-------GCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 28283 0.66 0.456711
Target:  5'- cGCCGCC-GCGGCCgcGGUcgucuccuucguucGCgGCGCCc -3'
miRNA:   3'- cCGGUGGaCGUCGG--CCA--------------CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 107121 0.67 0.454068
Target:  5'- cGCCACC-GC-GCCGGcgacggcgcccacgGCCGCgGCCa -3'
miRNA:   3'- cCGGUGGaCGuCGGCCa-------------CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 48640 0.67 0.454068
Target:  5'- cGCC-CCUGC-GCCGGcccccgcccggagaGCCGCGCg- -3'
miRNA:   3'- cCGGuGGACGuCGGCCa-------------CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 103754 0.67 0.450556
Target:  5'- -uCCGCCUGC-GCCucGUGCagcaGCGCCa -3'
miRNA:   3'- ccGGUGGACGuCGGc-CACGg---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 49246 0.67 0.450556
Target:  5'- cGGCCGCCgccGCGGCgGcGUcGgCGCGCa- -3'
miRNA:   3'- -CCGGUGGa--CGUCGgC-CA-CgGCGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.