miRNA display CGI


Results 101 - 120 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 36816 0.67 0.450556
Target:  5'- cGCUACgUGCcccGGUaugCGGUGCCgGCGCCc -3'
miRNA:   3'- cCGGUGgACG---UCG---GCCACGG-CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 112224 0.67 0.450556
Target:  5'- aGGUgACCaGCAGCaCGGagGCCGUggagGCCa -3'
miRNA:   3'- -CCGgUGGaCGUCG-GCCa-CGGCG----CGGa -5'
23613 3' -64.6 NC_005261.1 + 124390 0.67 0.450556
Target:  5'- aGGCCccccACCccCAGCCGGUacuGCaGCGCCa -3'
miRNA:   3'- -CCGG----UGGacGUCGGCCA---CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 125789 0.67 0.450556
Target:  5'- aGGCCGCUgcgaacgggGCuugGGCCGGgGCCGcCGCg- -3'
miRNA:   3'- -CCGGUGGa--------CG---UCGGCCaCGGC-GCGga -5'
23613 3' -64.6 NC_005261.1 + 29303 0.67 0.450556
Target:  5'- aGGCCugGCCcgGCAGCgCGccGCCGcCGCCc -3'
miRNA:   3'- -CCGG--UGGa-CGUCG-GCcaCGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 49246 0.67 0.450556
Target:  5'- cGGCCGCCgccGCGGCgGcGUcGgCGCGCa- -3'
miRNA:   3'- -CCGGUGGa--CGUCGgC-CA-CgGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 103754 0.67 0.450556
Target:  5'- -uCCGCCUGC-GCCucGUGCagcaGCGCCa -3'
miRNA:   3'- ccGGUGGACGuCGGc-CACGg---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 116513 0.67 0.450556
Target:  5'- cGCCGCCgcgGCGGCgCGaG-GCC-CGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCG-GC-CaCGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 135712 0.67 0.449681
Target:  5'- cGCCACCUGCccAGCCuGUacauguucgugauGCuggCGCGCCUc -3'
miRNA:   3'- cCGGUGGACG--UCGGcCA-------------CG---GCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 17162 0.67 0.449681
Target:  5'- cGUCACCcGCGGCgCGGgcgugggcagcccUGCCGCGgCg -3'
miRNA:   3'- cCGGUGGaCGUCG-GCC-------------ACGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 129887 0.67 0.447933
Target:  5'- cGGCCGCCaUGCggauGGCCuGGUccaccaugcuguccGUCGUGCCc -3'
miRNA:   3'- -CCGGUGG-ACG----UCGG-CCA--------------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 35976 0.67 0.445317
Target:  5'- cGGCCGCUguaGCGGCggcggcuccuggcggCGGUaaucGCCGCgGCCa -3'
miRNA:   3'- -CCGGUGGa--CGUCG---------------GCCA----CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 108322 0.67 0.445317
Target:  5'- cGGCCGCC-GCGugcuccgcgacccgcGCCaGG-GCCGcCGCCg -3'
miRNA:   3'- -CCGGUGGaCGU---------------CGG-CCaCGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 52226 0.67 0.444448
Target:  5'- cGCgGCgCUGCGGCCGGUacgguuucgugggagGgcgcuguCCGCGCCg -3'
miRNA:   3'- cCGgUG-GACGUCGGCCA---------------C-------GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29423 0.67 0.441844
Target:  5'- cGGCCgcgggGCCcGCGGCC-GUGuUCGUGCCg -3'
miRNA:   3'- -CCGG-----UGGaCGUCGGcCAC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 131755 0.67 0.441844
Target:  5'- cGGCaCGCCgGcCGGCgCGGcgGgCGCGCCg -3'
miRNA:   3'- -CCG-GUGGaC-GUCG-GCCa-CgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 104334 0.67 0.441844
Target:  5'- cGCguCCaGCGGCCGGccGUCGCGCa- -3'
miRNA:   3'- cCGguGGaCGUCGGCCa-CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 88027 0.67 0.441844
Target:  5'- cGGCCggcgguGCCUGgGGgCGGUccagucacgcGCCuGCGCCg -3'
miRNA:   3'- -CCGG------UGGACgUCgGCCA----------CGG-CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 64043 0.67 0.441844
Target:  5'- cGCgGCuCUGC-GCCGcGUGgUGCGCCa -3'
miRNA:   3'- cCGgUG-GACGuCGGC-CACgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 56812 0.67 0.441844
Target:  5'- gGGCCACggUGUucCUGGUGCCGCGgCg -3'
miRNA:   3'- -CCGGUGg-ACGucGGCCACGGCGCgGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.