miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 4127 0.7 0.271014
Target:  5'- uGGCC-CCgGCAGCCc-UGCaCGCGCCg -3'
miRNA:   3'- -CCGGuGGaCGUCGGccACG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 4380 0.72 0.197545
Target:  5'- cGCCGCCgaagcgcacGCGGCCGGgcggcggcggcgcgcUGCCGgGCCa -3'
miRNA:   3'- cCGGUGGa--------CGUCGGCC---------------ACGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 4881 0.7 0.277205
Target:  5'- cGGCCGCCU-CAGCCGcG-GCCGCcucgGCUUc -3'
miRNA:   3'- -CCGGUGGAcGUCGGC-CaCGGCG----CGGA- -5'
23613 3' -64.6 NC_005261.1 + 4917 0.7 0.277205
Target:  5'- cGGCUGCCUccgccGCGGCCGcGagcGcCCGCGCCg -3'
miRNA:   3'- -CCGGUGGA-----CGUCGGC-Ca--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 5147 0.67 0.42471
Target:  5'- cGCgCGCCU-CGGcCCGGcggGCCGCGUCg -3'
miRNA:   3'- cCG-GUGGAcGUC-GGCCa--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 5488 0.68 0.383669
Target:  5'- cGCgCGCCgggggGUAGCUGGgGCCGCGgCa -3'
miRNA:   3'- cCG-GUGGa----CGUCGGCCaCGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 6424 0.68 0.367235
Target:  5'- cGGCCugCUcgcgaggGCGGuCCGGggGCCG-GCCg -3'
miRNA:   3'- -CCGGugGA-------CGUC-GGCCa-CGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 7613 0.73 0.164135
Target:  5'- cGGCCGCuggaucugccucugCUGCcGCCGcUGCCGCGUCUg -3'
miRNA:   3'- -CCGGUG--------------GACGuCGGCcACGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 10401 0.67 0.42471
Target:  5'- cGGCUucuuUCUGCucGGCCauacgGGUGCUGUGCCc -3'
miRNA:   3'- -CCGGu---GGACG--UCGG-----CCACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 11918 0.71 0.236188
Target:  5'- cGGCCcgGCCgGCGGCUGcGgcgGcCCGCGCCg -3'
miRNA:   3'- -CCGG--UGGaCGUCGGC-Ca--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 12190 0.82 0.044258
Target:  5'- cGCCACCaUGCAgcgccgccGCCGGUGCCGcCGCCg -3'
miRNA:   3'- cCGGUGG-ACGU--------CGGCCACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 12339 0.68 0.352789
Target:  5'- uGGCCGgC-GCGGCCGccGCCGCGgCg -3'
miRNA:   3'- -CCGGUgGaCGUCGGCcaCGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 12623 0.72 0.200384
Target:  5'- cGCCACCacggUGUAGuCCGGcgcggucugggGCCGCGCCg -3'
miRNA:   3'- cCGGUGG----ACGUC-GGCCa----------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 13938 0.68 0.391665
Target:  5'- cGGUCGCgUUGCGGCCca-GCCGCGCg- -3'
miRNA:   3'- -CCGGUG-GACGUCGGccaCGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 14214 0.66 0.486313
Target:  5'- gGGCgCACCaacGC-GCgCGGUGaagaCCGCGCCg -3'
miRNA:   3'- -CCG-GUGGa--CGuCG-GCCAC----GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 14355 0.69 0.309853
Target:  5'- cGGCagcaGCC-GCGGCCGGgGCgGCGCg- -3'
miRNA:   3'- -CCGg---UGGaCGUCGGCCaCGgCGCGga -5'
23613 3' -64.6 NC_005261.1 + 14778 0.68 0.352789
Target:  5'- gGGCCGCCccGC-GCaGGUGCCGCuCCc -3'
miRNA:   3'- -CCGGUGGa-CGuCGgCCACGGCGcGGa -5'
23613 3' -64.6 NC_005261.1 + 14975 0.71 0.225442
Target:  5'- gGGCgACUgcGCGGCCGcGccgGCCGCGCCc -3'
miRNA:   3'- -CCGgUGGa-CGUCGGC-Ca--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 15913 0.69 0.345348
Target:  5'- cGCC-CCgcGCAGCCGGgGCCgGgGCCg -3'
miRNA:   3'- cCGGuGGa-CGUCGGCCaCGG-CgCGGa -5'
23613 3' -64.6 NC_005261.1 + 16227 0.66 0.486313
Target:  5'- cGGCCAgCCcucgggGCGGUCGacGU-CCGCGCCg -3'
miRNA:   3'- -CCGGU-GGa-----CGUCGGC--CAcGGCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.