miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 16261 0.69 0.338021
Target:  5'- gGGCCGCC-GgGGCCGGgcuucgGCUcgcccggggggGCGCCg -3'
miRNA:   3'- -CCGGUGGaCgUCGGCCa-----CGG-----------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 17162 0.67 0.449681
Target:  5'- cGUCACCcGCGGCgCGGgcgugggcagcccUGCCGCGgCg -3'
miRNA:   3'- cCGGUGGaCGUCG-GCC-------------ACGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 19404 0.66 0.46826
Target:  5'- cGGUgAUCgGC--CCGuGUGCCGCGCCg -3'
miRNA:   3'- -CCGgUGGaCGucGGC-CACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 19523 0.66 0.477244
Target:  5'- aGGCC-CC-GCAGCaCGGc-CCGCGUCa -3'
miRNA:   3'- -CCGGuGGaCGUCG-GCCacGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 20227 0.68 0.375783
Target:  5'- cGCUGCCUGgcCAGCCGcuccGCCGCGCgCUc -3'
miRNA:   3'- cCGGUGGAC--GUCGGCca--CGGCGCG-GA- -5'
23613 3' -64.6 NC_005261.1 + 20649 0.66 0.495463
Target:  5'- cGCCGCCcGCAccGCCGGUGgCG-GCa- -3'
miRNA:   3'- cCGGUGGaCGU--CGGCCACgGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 20701 0.68 0.368006
Target:  5'- cGGCUacaACCUGCuGaacuCGG-GCCGCGCUg -3'
miRNA:   3'- -CCGG---UGGACGuCg---GCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 21793 0.79 0.068704
Target:  5'- gGGCCGCC-GCAGCCGccgGCCGgGCCg -3'
miRNA:   3'- -CCGGUGGaCGUCGGCca-CGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 22804 0.66 0.46826
Target:  5'- cGCgGCCgGCGGCgGcGcUGCCGcCGCCg -3'
miRNA:   3'- cCGgUGGaCGUCGgC-C-ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 23220 0.69 0.316723
Target:  5'- cGGCCGCgC-GCaaaAGCCGGUGCagCGgGCCg -3'
miRNA:   3'- -CCGGUG-GaCG---UCGGCCACG--GCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 23614 0.66 0.50469
Target:  5'- cGCCGCC-GCuGCCGG-GgCGCGgCg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCgGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 23704 0.7 0.277205
Target:  5'- aGGcCCGCCcggucgggugGCaAGCgGGUgGCCGCGCCg -3'
miRNA:   3'- -CC-GGUGGa---------CG-UCGgCCA-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 25813 0.66 0.46826
Target:  5'- cGCCAUCUGguGgC---GCCGCGCCg -3'
miRNA:   3'- cCGGUGGACguCgGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 28200 0.71 0.253109
Target:  5'- cGGCgGCCUcGCcGCCGcUGCCGCgGCCc -3'
miRNA:   3'- -CCGgUGGA-CGuCGGCcACGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 28283 0.66 0.456711
Target:  5'- cGCCGCC-GCGGCCgcGGUcgucuccuucguucGCgGCGCCc -3'
miRNA:   3'- cCGGUGGaCGUCGG--CCA--------------CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 28367 0.67 0.433227
Target:  5'- -uCCACCgacCAGCCGGcUGgccgacCCGCGCCUc -3'
miRNA:   3'- ccGGUGGac-GUCGGCC-AC------GGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 28581 0.66 0.50469
Target:  5'- aGGCgCGCgaGC-GCCGGcggGCCgcccGCGCCg -3'
miRNA:   3'- -CCG-GUGgaCGuCGGCCa--CGG----CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 28746 0.68 0.352789
Target:  5'- aGGCCccagaggacGCC-GCGGCCGGgggcgccuggGCCGCGgCg -3'
miRNA:   3'- -CCGG---------UGGaCGUCGGCCa---------CGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 28819 0.68 0.360341
Target:  5'- cGCCGCCga-AGCCGaGgcgGCCGCGgCUg -3'
miRNA:   3'- cCGGUGGacgUCGGC-Ca--CGGCGCgGA- -5'
23613 3' -64.6 NC_005261.1 + 28860 0.74 0.146322
Target:  5'- uGGCCGCCgcccuugaggcUGCGGCgCGGacGCCGCcGCCUg -3'
miRNA:   3'- -CCGGUGG-----------ACGUCG-GCCa-CGGCG-CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.