miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 29260 0.66 0.495463
Target:  5'- gGGCCGCC-GCcGCUGGaggGCC-CGCUg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCCa--CGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29303 0.67 0.450556
Target:  5'- aGGCCugGCCcgGCAGCgCGccGCCGcCGCCc -3'
miRNA:   3'- -CCGG--UGGa-CGUCG-GCcaCGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 29423 0.67 0.441844
Target:  5'- cGGCCgcgggGCCcGCGGCC-GUGuUCGUGCCg -3'
miRNA:   3'- -CCGG-----UGGaCGUCGGcCAC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29550 0.75 0.129322
Target:  5'- gGGCCcggACCUGCAGCUGG---CGCGCCUg -3'
miRNA:   3'- -CCGG---UGGACGUCGGCCacgGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 29639 0.68 0.359581
Target:  5'- cGCCG-CUGCcGCCGGUcggggacgccaugGCCGCGCa- -3'
miRNA:   3'- cCGGUgGACGuCGGCCA-------------CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 29801 0.72 0.200384
Target:  5'- aGGCCggcGCCgGCGGCgCGGgcgcCCGCGCCg -3'
miRNA:   3'- -CCGG---UGGaCGUCG-GCCac--GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29862 0.73 0.177784
Target:  5'- cGGCCGCgCgGC-GCCGGcGCCGCuGCCg -3'
miRNA:   3'- -CCGGUG-GaCGuCGGCCaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 29950 0.66 0.462911
Target:  5'- cGGCCuGCCgcgaggcgcuagagGCGGCgCGGUGCgC-CGCCg -3'
miRNA:   3'- -CCGG-UGGa-------------CGUCG-GCCACG-GcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 30041 0.69 0.316723
Target:  5'- gGGCCgcgGCCUGcCGGCCGcG-GCCuGCGCUc -3'
miRNA:   3'- -CCGG---UGGAC-GUCGGC-CaCGG-CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 30196 0.73 0.173545
Target:  5'- cGGCCGCC-GC-GCUGGaggcgGCCGCGCUg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCCa----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 30331 0.7 0.264935
Target:  5'- uGCCGgC-GCGGCUGGcgGCCGCGCUc -3'
miRNA:   3'- cCGGUgGaCGUCGGCCa-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 30358 0.68 0.375783
Target:  5'- cGGCCcugaagGCCgGCGcGCCGGgcGCCGCGgCg -3'
miRNA:   3'- -CCGG------UGGaCGU-CGGCCa-CGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 30877 0.66 0.50469
Target:  5'- gGGCCGCCggcccUGCcgcccgagcucgGGCUGGgGCCGC-CCg -3'
miRNA:   3'- -CCGGUGG-----ACG------------UCGGCCaCGGCGcGGa -5'
23613 3' -64.6 NC_005261.1 + 30928 0.69 0.316723
Target:  5'- cGGCCGCCggcGCAGCCccucGGgGgCGgGCCUc -3'
miRNA:   3'- -CCGGUGGa--CGUCGG----CCaCgGCgCGGA- -5'
23613 3' -64.6 NC_005261.1 + 31117 0.69 0.316723
Target:  5'- cGCCGCCgacgGCGgcuuccGCCGcGUGCCGC-CCg -3'
miRNA:   3'- cCGGUGGa---CGU------CGGC-CACGGCGcGGa -5'
23613 3' -64.6 NC_005261.1 + 31469 0.67 0.450556
Target:  5'- cGGCgGCCUGaguggccGCCGGUG-CGCGgCg -3'
miRNA:   3'- -CCGgUGGACgu-----CGGCCACgGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 31554 0.66 0.477244
Target:  5'- cGCaCGCCUG-GGCCGGguccuggacgGgCGCGCCg -3'
miRNA:   3'- cCG-GUGGACgUCGGCCa---------CgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 31656 0.68 0.383669
Target:  5'- cGGUCgaguaccucuGCCUGCGGCUGGccGCgGCGCg- -3'
miRNA:   3'- -CCGG----------UGGACGUCGGCCa-CGgCGCGga -5'
23613 3' -64.6 NC_005261.1 + 31970 0.67 0.441844
Target:  5'- uGGCCacgcGCCUG-GGCCcgcgcaccgcGGUGCCcGUGCCg -3'
miRNA:   3'- -CCGG----UGGACgUCGG----------CCACGG-CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 32154 0.71 0.236188
Target:  5'- cGGCgCGCCgcUGCGGCCGGUGUaccUG-GCCUg -3'
miRNA:   3'- -CCG-GUGG--ACGUCGGCCACG---GCgCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.