miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 32249 0.69 0.309853
Target:  5'- cGGCCGCgCUGCuggAGCCGcacGCCgagGCGCCg -3'
miRNA:   3'- -CCGGUG-GACG---UCGGCca-CGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 32313 0.66 0.495463
Target:  5'- cGCCGCCgccGCGGCC---GCgGCGCCc -3'
miRNA:   3'- cCGGUGGa--CGUCGGccaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 32491 0.67 0.433227
Target:  5'- gGGCCGgCgacgGCGGCaucggCGGgggGuCCGCGCCg -3'
miRNA:   3'- -CCGGUgGa---CGUCG-----GCCa--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 32539 0.66 0.50469
Target:  5'- cGGCC-CCggccGCGGCgCGG-GCCgGCGCg- -3'
miRNA:   3'- -CCGGuGGa---CGUCG-GCCaCGG-CGCGga -5'
23613 3' -64.6 NC_005261.1 + 33326 0.68 0.391665
Target:  5'- uGCCGCC-GCcGCCGccGCCGcCGCCa -3'
miRNA:   3'- cCGGUGGaCGuCGGCcaCGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 33356 0.8 0.05308
Target:  5'- cGCCACC-GCcGCCGG-GCCGCGCCg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 33386 0.79 0.07049
Target:  5'- gGGCCGCC-GCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- -CCGGUGGaCGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 33420 0.76 0.120017
Target:  5'- aGCCGCCgccGCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 33456 0.76 0.120017
Target:  5'- aGCCGCCgccGCAGCCGccGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCGGCcaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 33733 0.67 0.407978
Target:  5'- gGGCCugccCCUcGCGcggcGCCGGgGCCGgGCCc -3'
miRNA:   3'- -CCGGu---GGA-CGU----CGGCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 33811 0.66 0.50469
Target:  5'- gGGCUugUcuuuggGCGGCCGGgggGCgCGgGCCc -3'
miRNA:   3'- -CCGGugGa-----CGUCGGCCa--CG-GCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 33953 0.74 0.149958
Target:  5'- cGCCGCCUGUcGCUGGaccuucUGCCGcCGCCg -3'
miRNA:   3'- cCGGUGGACGuCGGCC------ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 34349 0.71 0.241721
Target:  5'- gGGCgGCCgacGgGGCCGGgcGCCGCGCg- -3'
miRNA:   3'- -CCGgUGGa--CgUCGGCCa-CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 34472 0.73 0.17229
Target:  5'- gGGCCccguACCUGCGGCgGGUGCUggagugggucgaggGCGCUc -3'
miRNA:   3'- -CCGG----UGGACGUCGgCCACGG--------------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 34927 0.68 0.360341
Target:  5'- cGGCCACgCgggggGCGGCCGGcgcgacCCGgGCCc -3'
miRNA:   3'- -CCGGUG-Ga----CGUCGGCCac----GGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 35007 0.66 0.477244
Target:  5'- --aCACCUGCggugcGGCCGGcgucucggucgcUGgCGCGCCg -3'
miRNA:   3'- ccgGUGGACG-----UCGGCC------------ACgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 35057 0.69 0.338021
Target:  5'- cGGCCGCgCgGCGG-CGGUcuCCGCGCCc -3'
miRNA:   3'- -CCGGUG-GaCGUCgGCCAc-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 35737 0.67 0.42471
Target:  5'- aGGCCACCUG-GGCCGaagccaGCCGCGa-- -3'
miRNA:   3'- -CCGGUGGACgUCGGCca----CGGCGCgga -5'
23613 3' -64.6 NC_005261.1 + 35907 0.71 0.258967
Target:  5'- -cCCGCCgcgGCAGCgCGGccCCGCGCCg -3'
miRNA:   3'- ccGGUGGa--CGUCG-GCCacGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 35976 0.67 0.445317
Target:  5'- cGGCCGCUguaGCGGCggcggcuccuggcggCGGUaaucGCCGCgGCCa -3'
miRNA:   3'- -CCGGUGGa--CGUCG---------------GCCA----CGGCG-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.