miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 137865 0.72 0.205194
Target:  5'- cGCC-CCUGguGCucccggggccagCGGUGCCGcCGCCg -3'
miRNA:   3'- cCGGuGGACguCG------------GCCACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 137796 0.72 0.205194
Target:  5'- cGCCGCCcGC-GCCGGcGCCGCcCCUg -3'
miRNA:   3'- cCGGUGGaCGuCGGCCaCGGCGcGGA- -5'
23613 3' -64.6 NC_005261.1 + 137535 0.66 0.50469
Target:  5'- uGGCCACCaagGuUGGCuUGGUGCCaacccuagccucGCGCCc -3'
miRNA:   3'- -CCGGUGGa--C-GUCG-GCCACGG------------CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 136486 0.71 0.24736
Target:  5'- gGGCagcaGCgaGCAGCuCGGcGCCGaCGCCUg -3'
miRNA:   3'- -CCGg---UGgaCGUCG-GCCaCGGC-GCGGA- -5'
23613 3' -64.6 NC_005261.1 + 135712 0.67 0.449681
Target:  5'- cGCCACCUGCccAGCCuGUacauguucgugauGCuggCGCGCCUc -3'
miRNA:   3'- cCGGUGGACG--UCGGcCA-------------CG---GCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 135588 0.68 0.368006
Target:  5'- uGGCCAC----GGCCGGcGCCGUGCUg -3'
miRNA:   3'- -CCGGUGgacgUCGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 135442 0.66 0.50469
Target:  5'- cGCCGCCcagGCGGCgCGGgcGCUGCGggaCCUc -3'
miRNA:   3'- cCGGUGGa--CGUCG-GCCa-CGGCGC---GGA- -5'
23613 3' -64.6 NC_005261.1 + 135043 0.68 0.368006
Target:  5'- aGGCCgacGCCUGCGG-CGGcagcgGCC-CGCCg -3'
miRNA:   3'- -CCGG---UGGACGUCgGCCa----CGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 134518 0.66 0.477244
Target:  5'- aGCCugcGCCUGCAGCUGcugGgCGCGCa- -3'
miRNA:   3'- cCGG---UGGACGUCGGCca-CgGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 134359 0.66 0.46826
Target:  5'- cGCCGCC-GC-GCgGGggGCgGCGCCg -3'
miRNA:   3'- cCGGUGGaCGuCGgCCa-CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 134222 0.67 0.440978
Target:  5'- cGGCgGCCgGCAGCgucggcgUGGcGCaCGCGCCc -3'
miRNA:   3'- -CCGgUGGaCGUCG-------GCCaCG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 133836 0.8 0.054332
Target:  5'- cGGCCGCgUGCgcgccguGGCCGGcgcgcgcgacUGCCGCGCCUa -3'
miRNA:   3'- -CCGGUGgACG-------UCGGCC----------ACGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 133608 0.69 0.338021
Target:  5'- cGGcCCACCUcGCgcuggcgcugugGGCCGcGcucGCCGCGCCg -3'
miRNA:   3'- -CC-GGUGGA-CG------------UCGGC-Ca--CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 132871 0.68 0.383669
Target:  5'- aGCCugcGCCUGCccuucuucggcaAGCCGGgcgccgcggGCgGCGCCg -3'
miRNA:   3'- cCGG---UGGACG------------UCGGCCa--------CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 132462 0.67 0.407978
Target:  5'- cGGCCGCCcuccGC-GCCGGcagcGCCuCGCCg -3'
miRNA:   3'- -CCGGUGGa---CGuCGGCCa---CGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 132063 0.68 0.368006
Target:  5'- uGGCgGCCgaggucGCGGCCGccGUcGCCGCuGCCg -3'
miRNA:   3'- -CCGgUGGa-----CGUCGGC--CA-CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 131867 0.71 0.24736
Target:  5'- cGGCUGCUUG-AGCUGGcgGCCGcCGCCg -3'
miRNA:   3'- -CCGGUGGACgUCGGCCa-CGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 131755 0.67 0.441844
Target:  5'- cGGCaCGCCgGcCGGCgCGGcgGgCGCGCCg -3'
miRNA:   3'- -CCG-GUGGaC-GUCG-GCCa-CgGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 131417 0.68 0.351292
Target:  5'- cGCCGCUgccgGCAgcggcGCCGGcgccccccuugcGCCGCGCCUc -3'
miRNA:   3'- cCGGUGGa---CGU-----CGGCCa-----------CGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 131186 0.67 0.42471
Target:  5'- cGGCUacGCCcGCGGCgCGGUcGCCgccggcGCGCCc -3'
miRNA:   3'- -CCGG--UGGaCGUCG-GCCA-CGG------CGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.