miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 131089 0.67 0.399768
Target:  5'- uGGCCAC--GUAcGCCGucGCCGCGCCg -3'
miRNA:   3'- -CCGGUGgaCGU-CGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 130831 0.72 0.214608
Target:  5'- aGGCCACCgugcgcucaaccuUGCgcgcgcgcccGGCCGGgcGCCGCgGCCUg -3'
miRNA:   3'- -CCGGUGG-------------ACG----------UCGGCCa-CGGCG-CGGA- -5'
23613 3' -64.6 NC_005261.1 + 130584 0.68 0.360341
Target:  5'- cGCCGCCgcGCGGCC----CCGCGCCUg -3'
miRNA:   3'- cCGGUGGa-CGUCGGccacGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 130303 0.68 0.360341
Target:  5'- aGCCACCcaacCAGCCGcUGCaGCGCCa -3'
miRNA:   3'- cCGGUGGac--GUCGGCcACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 130199 0.68 0.386855
Target:  5'- cGGCCACCaccgccuccUGCaggcggaagagcgucGGCCcgcucaGGcGCCGCGCCa -3'
miRNA:   3'- -CCGGUGG---------ACG---------------UCGG------CCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 129887 0.67 0.447933
Target:  5'- cGGCCGCCaUGCggauGGCCuGGUccaccaugcuguccGUCGUGCCc -3'
miRNA:   3'- -CCGGUGG-ACG----UCGG-CCA--------------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 129310 0.72 0.210103
Target:  5'- cGCCccgcGCCUGC-GCUGGcGCCGCGUCg -3'
miRNA:   3'- cCGG----UGGACGuCGGCCaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 129204 0.77 0.098168
Target:  5'- uGGCgCAgCUGCuucuGCUGGUGCgGCGCCUc -3'
miRNA:   3'- -CCG-GUgGACGu---CGGCCACGgCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 129023 0.7 0.289277
Target:  5'- cGGCUGCCcGUAGCCuacgcGGcagacgcccacgcUGCCGCGCCc -3'
miRNA:   3'- -CCGGUGGaCGUCGG-----CC-------------ACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 127835 0.74 0.161363
Target:  5'- cGGCCGCgaGCAGCggacggggCGGUcGCgGCGCCa -3'
miRNA:   3'- -CCGGUGgaCGUCG--------GCCA-CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 127784 0.67 0.416292
Target:  5'- cGGCUGCUcgagcgGCgGGCCGGcGCCGCGgCg -3'
miRNA:   3'- -CCGGUGGa-----CG-UCGGCCaCGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 127687 0.67 0.42471
Target:  5'- cGGCCGCUgccccgGCGgcGCCGGaggaGCUGCGCg- -3'
miRNA:   3'- -CCGGUGGa-----CGU--CGGCCa---CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 127606 0.69 0.338749
Target:  5'- gGGCCGCgCUgaacgcuaGCGGCCGGccggacgcgacggcgGCgGCGCCg -3'
miRNA:   3'- -CCGGUG-GA--------CGUCGGCCa--------------CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 127068 0.67 0.433227
Target:  5'- gGGUC-CaUGguGCCGccGCCGCGCCg -3'
miRNA:   3'- -CCGGuGgACguCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 126495 0.66 0.50469
Target:  5'- cGCCACCagcugccGCAGgCGGUcuGCCuggGCGCCc -3'
miRNA:   3'- cCGGUGGa------CGUCgGCCA--CGG---CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 126247 0.67 0.416292
Target:  5'- aGCCGCC-GCAGCUcc-GCCGCGUCc -3'
miRNA:   3'- cCGGUGGaCGUCGGccaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 125861 0.66 0.50469
Target:  5'- aGGCgGCaaacuCGGCCGGgGCgGCGCCc -3'
miRNA:   3'- -CCGgUGgac--GUCGGCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 125789 0.67 0.450556
Target:  5'- aGGCCGCUgcgaacgggGCuugGGCCGGgGCCGcCGCg- -3'
miRNA:   3'- -CCGGUGGa--------CG---UCGGCCaCGGC-GCGga -5'
23613 3' -64.6 NC_005261.1 + 125715 0.7 0.264935
Target:  5'- cGGCCGCCgcggGCucGGCUGGgGCCGCcgcaaggggGCCg -3'
miRNA:   3'- -CCGGUGGa---CG--UCGGCCaCGGCG---------CGGa -5'
23613 3' -64.6 NC_005261.1 + 124441 0.68 0.383669
Target:  5'- cGCCGCCacacCAGCCGGgGCCggGUGCCc -3'
miRNA:   3'- cCGGUGGac--GUCGGCCaCGG--CGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.