miRNA display CGI


Results 41 - 60 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 124390 0.67 0.450556
Target:  5'- aGGCCccccACCccCAGCCGGUacuGCaGCGCCa -3'
miRNA:   3'- -CCGG----UGGacGUCGGCCA---CGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 124223 0.67 0.415456
Target:  5'- uGGCUGCCaGCAGCCcaaccgccgccgcGGgcaggcGCCGCGCg- -3'
miRNA:   3'- -CCGGUGGaCGUCGG-------------CCa-----CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 124073 0.7 0.296453
Target:  5'- cGGCCGaCUGCAGcCCGGcGCcCGCGUa- -3'
miRNA:   3'- -CCGGUgGACGUC-GGCCaCG-GCGCGga -5'
23613 3' -64.6 NC_005261.1 + 123902 0.72 0.200384
Target:  5'- aGGCCGCCgcuguggggUGCGGCCcgagcaGGUGC-GCGCCc -3'
miRNA:   3'- -CCGGUGG---------ACGUCGG------CCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 123500 0.73 0.186539
Target:  5'- gGGCgCACCaGCGGCa-GUGCCGCGUCc -3'
miRNA:   3'- -CCG-GUGGaCGUCGgcCACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 123404 0.66 0.505617
Target:  5'- cGCCGCUUGcCGGCCagGGgcgggcucgccacggGCCGCaGCCg -3'
miRNA:   3'- cCGGUGGAC-GUCGG--CCa--------------CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 123229 0.68 0.375783
Target:  5'- uGCCGCCUaGCGGCCGcccagGCgCGgGCCc -3'
miRNA:   3'- cCGGUGGA-CGUCGGCca---CG-GCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 123074 0.68 0.390057
Target:  5'- aGGCC-CCgagagGCGGCCGGccacgccauuucGCCGCGgCg -3'
miRNA:   3'- -CCGGuGGa----CGUCGGCCa-----------CGGCGCgGa -5'
23613 3' -64.6 NC_005261.1 + 122988 0.68 0.391665
Target:  5'- uGGCCuCCUGCagGGCCacuacgGCCGCgGCCg -3'
miRNA:   3'- -CCGGuGGACG--UCGGcca---CGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 122688 0.67 0.416292
Target:  5'- aGCUgcGCCUGCuccaucgccgcGCCGccgGCCGCGCCg -3'
miRNA:   3'- cCGG--UGGACGu----------CGGCca-CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 122349 0.66 0.50469
Target:  5'- aGCuCGCCUgGCGGCCGcG-GCuCGCGCg- -3'
miRNA:   3'- cCG-GUGGA-CGUCGGC-CaCG-GCGCGga -5'
23613 3' -64.6 NC_005261.1 + 121830 0.68 0.383669
Target:  5'- gGGCCGCCgcgGCGGCgcacCGGcGCCaGCaGCCc -3'
miRNA:   3'- -CCGGUGGa--CGUCG----GCCaCGG-CG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 121780 0.66 0.495463
Target:  5'- gGGUgGCC-GCGGCCGGcggGCUGgGCa- -3'
miRNA:   3'- -CCGgUGGaCGUCGGCCa--CGGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 121640 0.7 0.271014
Target:  5'- cGGCCGCCgccgGCgAGCgCGGgcUGuCCGCGUCg -3'
miRNA:   3'- -CCGGUGGa---CG-UCG-GCC--AC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 121394 0.66 0.50469
Target:  5'- cGGCggCGCCUGCccgAGUgcgaCGGcUGCCGcCGCCg -3'
miRNA:   3'- -CCG--GUGGACG---UCG----GCC-ACGGC-GCGGa -5'
23613 3' -64.6 NC_005261.1 + 121261 0.66 0.50469
Target:  5'- gGGuCCGCC-GCAGaCGGggcgGCCGCcccgGCCUc -3'
miRNA:   3'- -CC-GGUGGaCGUCgGCCa---CGGCG----CGGA- -5'
23613 3' -64.6 NC_005261.1 + 121173 0.66 0.477244
Target:  5'- cGGgCGCUcggUGCacggGGCCGGgGCCGgGCCc -3'
miRNA:   3'- -CCgGUGG---ACG----UCGGCCaCGGCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 120640 0.71 0.225442
Target:  5'- cGGCCcuguGCCUGCGGCgcaaGGcgcgGgCGCGCCUg -3'
miRNA:   3'- -CCGG----UGGACGUCGg---CCa---CgGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 120595 0.7 0.277205
Target:  5'- uGGCCgucGCCUGCGGCCucGGcGCCGUGgggcuCCUg -3'
miRNA:   3'- -CCGG---UGGACGUCGG--CCaCGGCGC-----GGA- -5'
23613 3' -64.6 NC_005261.1 + 120497 0.69 0.345348
Target:  5'- uGCCACCgGCuacCCGGcGCCGCuGCCc -3'
miRNA:   3'- cCGGUGGaCGuc-GGCCaCGGCG-CGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.