miRNA display CGI


Results 61 - 80 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 120001 0.82 0.043121
Target:  5'- aGGgCGCCggcuacGCGGCCGuGUGCCGCGCCg -3'
miRNA:   3'- -CCgGUGGa-----CGUCGGC-CACGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118965 0.67 0.416292
Target:  5'- uGGCCAagguCCUGCAcGCCGc-GCUGUGCUUc -3'
miRNA:   3'- -CCGGU----GGACGU-CGGCcaCGGCGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 118884 0.76 0.120017
Target:  5'- cGGCCACCgcggGCGcGCUGGUgGCCuGCGUCUg -3'
miRNA:   3'- -CCGGUGGa---CGU-CGGCCA-CGG-CGCGGA- -5'
23613 3' -64.6 NC_005261.1 + 118839 0.71 0.258967
Target:  5'- uGCCGCuCUGCGGCgCGGaggGCggCGCGCCc -3'
miRNA:   3'- cCGGUG-GACGUCG-GCCa--CG--GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118630 0.73 0.173545
Target:  5'- uGGCCGCCgcgGCGGCgcucugggcccCGG-GCCGCGCgCUc -3'
miRNA:   3'- -CCGGUGGa--CGUCG-----------GCCaCGGCGCG-GA- -5'
23613 3' -64.6 NC_005261.1 + 118402 0.7 0.271014
Target:  5'- cGGCCGCggGC-GCCGcaGCCGCGCUg -3'
miRNA:   3'- -CCGGUGgaCGuCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118291 0.66 0.478147
Target:  5'- cGGCCGCCgcggGCA-CCGGggcgcacuuccgcaCCGCGCUg -3'
miRNA:   3'- -CCGGUGGa---CGUcGGCCac------------GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 118250 0.69 0.345348
Target:  5'- cGCCGUCUGCGgcguGCCGGUGCacugCGCGCaCUu -3'
miRNA:   3'- cCGGUGGACGU----CGGCCACG----GCGCG-GA- -5'
23613 3' -64.6 NC_005261.1 + 118208 0.68 0.382876
Target:  5'- uGCCGCgCUGCgcggggcgcugacGGCCGcG-GCCGCgGCCUa -3'
miRNA:   3'- cCGGUG-GACG-------------UCGGC-CaCGGCG-CGGA- -5'
23613 3' -64.6 NC_005261.1 + 118063 0.73 0.182115
Target:  5'- cGGCCGCggcaGCGGCCGcaGCCGCGCUc -3'
miRNA:   3'- -CCGGUGga--CGUCGGCcaCGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 117931 0.74 0.161363
Target:  5'- aGGCCGgCUGCGGCCcGUGC-GCGCUc -3'
miRNA:   3'- -CCGGUgGACGUCGGcCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 117699 0.68 0.360341
Target:  5'- aGGCCGgcCCUGaGGCCGGcGCgCGgGCCc -3'
miRNA:   3'- -CCGGU--GGACgUCGGCCaCG-GCgCGGa -5'
23613 3' -64.6 NC_005261.1 + 117629 0.67 0.399768
Target:  5'- aGCgACC-GC-GCCGGgcccgcGCCGCGCCc -3'
miRNA:   3'- cCGgUGGaCGuCGGCCa-----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 116924 0.68 0.352789
Target:  5'- aGCCGCCgcggGCuGCUGGacgccuuCCGCGCCa -3'
miRNA:   3'- cCGGUGGa---CGuCGGCCac-----GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 116711 0.69 0.309853
Target:  5'- cGGCCGCCaGCuGGCCGacGUcGCCGC-CCUg -3'
miRNA:   3'- -CCGGUGGaCG-UCGGC--CA-CGGCGcGGA- -5'
23613 3' -64.6 NC_005261.1 + 116513 0.67 0.450556
Target:  5'- cGCCGCCgcgGCGGCgCGaG-GCC-CGCCg -3'
miRNA:   3'- cCGGUGGa--CGUCG-GC-CaCGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 115403 0.7 0.271014
Target:  5'- gGGUCgucgACCgcgggcgGCAGCCGGgGCCGCgGCCc -3'
miRNA:   3'- -CCGG----UGGa------CGUCGGCCaCGGCG-CGGa -5'
23613 3' -64.6 NC_005261.1 + 114997 0.66 0.46826
Target:  5'- cGGCCGCC-GCGGCCccGGccCCGCggagGCCUc -3'
miRNA:   3'- -CCGGUGGaCGUCGG--CCacGGCG----CGGA- -5'
23613 3' -64.6 NC_005261.1 + 113561 0.68 0.360341
Target:  5'- uGGaCCGCgaGCAGUgguCGGUggccGCCGCGCUg -3'
miRNA:   3'- -CC-GGUGgaCGUCG---GCCA----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 113482 0.66 0.50469
Target:  5'- cGCCcgaACCUGCcGCUGaUGCgCGCGCUg -3'
miRNA:   3'- cCGG---UGGACGuCGGCcACG-GCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.