Results 41 - 60 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23613 | 3' | -64.6 | NC_005261.1 | + | 135442 | 0.66 | 0.50469 |
Target: 5'- cGCCGCCcagGCGGCgCGGgcGCUGCGggaCCUc -3' miRNA: 3'- cCGGUGGa--CGUCG-GCCa-CGGCGC---GGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 137535 | 0.66 | 0.50469 |
Target: 5'- uGGCCACCaagGuUGGCuUGGUGCCaacccuagccucGCGCCc -3' miRNA: 3'- -CCGGUGGa--C-GUCG-GCCACGG------------CGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 32539 | 0.66 | 0.50469 |
Target: 5'- cGGCC-CCggccGCGGCgCGG-GCCgGCGCg- -3' miRNA: 3'- -CCGGuGGa---CGUCG-GCCaCGG-CGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 106374 | 0.66 | 0.50469 |
Target: 5'- cGCCGCC-GUcGCCGuUGCCGcCGCUg -3' miRNA: 3'- cCGGUGGaCGuCGGCcACGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 113482 | 0.66 | 0.50469 |
Target: 5'- cGCCcgaACCUGCcGCUGaUGCgCGCGCUg -3' miRNA: 3'- cCGG---UGGACGuCGGCcACG-GCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 121394 | 0.66 | 0.50469 |
Target: 5'- cGGCggCGCCUGCccgAGUgcgaCGGcUGCCGcCGCCg -3' miRNA: 3'- -CCG--GUGGACG---UCG----GCC-ACGGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 121261 | 0.66 | 0.50469 |
Target: 5'- gGGuCCGCC-GCAGaCGGggcgGCCGCcccgGCCUc -3' miRNA: 3'- -CC-GGUGGaCGUCgGCCa---CGGCG----CGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 32313 | 0.66 | 0.495463 |
Target: 5'- cGCCGCCgccGCGGCC---GCgGCGCCc -3' miRNA: 3'- cCGGUGGa--CGUCGGccaCGgCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 44033 | 0.66 | 0.495463 |
Target: 5'- cGGCCGCCgcgcgGCGGCCGcG-GgCGgGCa- -3' miRNA: 3'- -CCGGUGGa----CGUCGGC-CaCgGCgCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 83488 | 0.66 | 0.495463 |
Target: 5'- cGCCGCCguagaGC-GCCaGGcGCgCGCGCCg -3' miRNA: 3'- cCGGUGGa----CGuCGG-CCaCG-GCGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 107688 | 0.66 | 0.495463 |
Target: 5'- uGCCGCC-GCGGCgGG-GgCGcCGCCg -3' miRNA: 3'- cCGGUGGaCGUCGgCCaCgGC-GCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 109231 | 0.66 | 0.495463 |
Target: 5'- cGCCGCgcgCUGCAGCgCGGcccagUGCgGgGCCa -3' miRNA: 3'- cCGGUG---GACGUCG-GCC-----ACGgCgCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 77659 | 0.66 | 0.499145 |
Target: 5'- cGGCCggcGCCUGCAGgcgcagggcgcggaCGG-GCCGgGCUa -3' miRNA: 3'- -CCGG---UGGACGUCg-------------GCCaCGGCgCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 96131 | 0.66 | 0.503764 |
Target: 5'- uGGUCgACCUGCGGCggcggcaCGagaaggccgucGUGCCGCGCg- -3' miRNA: 3'- -CCGG-UGGACGUCG-------GC-----------CACGGCGCGga -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 101744 | 0.66 | 0.50469 |
Target: 5'- gGGCCucGCUcgGCAGCUccaGGUGCaCGCccGCCUc -3' miRNA: 3'- -CCGG--UGGa-CGUCGG---CCACG-GCG--CGGA- -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 28581 | 0.66 | 0.50469 |
Target: 5'- aGGCgCGCgaGC-GCCGGcggGCCgcccGCGCCg -3' miRNA: 3'- -CCG-GUGgaCGuCGGCCa--CGG----CGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 30877 | 0.66 | 0.50469 |
Target: 5'- gGGCCGCCggcccUGCcgcccgagcucgGGCUGGgGCCGC-CCg -3' miRNA: 3'- -CCGGUGG-----ACG------------UCGGCCaCGGCGcGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 33811 | 0.66 | 0.50469 |
Target: 5'- gGGCUugUcuuuggGCGGCCGGgggGCgCGgGCCc -3' miRNA: 3'- -CCGGugGa-----CGUCGGCCa--CG-GCgCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 38527 | 0.66 | 0.50469 |
Target: 5'- cGCUGgCUGCGcgcGCCGG-GCacaGCGCCg -3' miRNA: 3'- cCGGUgGACGU---CGGCCaCGg--CGCGGa -5' |
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23613 | 3' | -64.6 | NC_005261.1 | + | 93778 | 0.66 | 0.50469 |
Target: 5'- cGUCGCa-GCAGgugcccCCGGgacGCCGCGCCg -3' miRNA: 3'- cCGGUGgaCGUC------GGCCa--CGGCGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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