miRNA display CGI


Results 81 - 100 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 3' -64.6 NC_005261.1 + 112090 0.66 0.486313
Target:  5'- cGCCACgUGguGCgCGGUGUucaaCGCGUa- -3'
miRNA:   3'- cCGGUGgACguCG-GCCACG----GCGCGga -5'
23613 3' -64.6 NC_005261.1 + 94885 0.66 0.486313
Target:  5'- cGGcCCGCgUGCAGCCacacGCgCGCGCUg -3'
miRNA:   3'- -CC-GGUGgACGUCGGcca-CG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 71237 0.66 0.486313
Target:  5'- cGGCCcUCggcggcGCAGCCGaGccCCGCGCCg -3'
miRNA:   3'- -CCGGuGGa-----CGUCGGC-CacGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 68115 0.66 0.486313
Target:  5'- gGGCUggagcugcgcggGCC-GCGGCgCGGcGaCCGCGCCg -3'
miRNA:   3'- -CCGG------------UGGaCGUCG-GCCaC-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 63420 0.66 0.486313
Target:  5'- cGGCguCCgacucGCcgucGCCGGcguagGCCGCGCCc -3'
miRNA:   3'- -CCGguGGa----CGu---CGGCCa----CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 59781 0.66 0.486313
Target:  5'- cGGCCGCagcgacgGCggcgggcggcaGGCCGGcGUgGCGCCg -3'
miRNA:   3'- -CCGGUGga-----CG-----------UCGGCCaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 14214 0.66 0.486313
Target:  5'- gGGCgCACCaacGC-GCgCGGUGaagaCCGCGCCg -3'
miRNA:   3'- -CCG-GUGGa--CGuCG-GCCAC----GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 102697 0.66 0.486313
Target:  5'- cGGCCGuCgCUGCcGCCGucuccGCCGCGUCc -3'
miRNA:   3'- -CCGGU-G-GACGuCGGCca---CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 44716 0.66 0.495463
Target:  5'- cGGCUgacgcgcgcaggGCgCUGCAGCUGGgccccgaGCUGCGCg- -3'
miRNA:   3'- -CCGG------------UG-GACGUCGGCCa------CGGCGCGga -5'
23613 3' -64.6 NC_005261.1 + 64263 0.66 0.495463
Target:  5'- cGCCAUCaucaGCAcGCCguGGUGCaGCGCCg -3'
miRNA:   3'- cCGGUGGa---CGU-CGG--CCACGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 83488 0.66 0.495463
Target:  5'- cGCCGCCguagaGC-GCCaGGcGCgCGCGCCg -3'
miRNA:   3'- cCGGUGGa----CGuCGG-CCaCG-GCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 44033 0.66 0.495463
Target:  5'- cGGCCGCCgcgcgGCGGCCGcG-GgCGgGCa- -3'
miRNA:   3'- -CCGGUGGa----CGUCGGC-CaCgGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 32313 0.66 0.495463
Target:  5'- cGCCGCCgccGCGGCC---GCgGCGCCc -3'
miRNA:   3'- cCGGUGGa--CGUCGGccaCGgCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 20649 0.66 0.495463
Target:  5'- cGCCGCCcGCAccGCCGGUGgCG-GCa- -3'
miRNA:   3'- cCGGUGGaCGU--CGGCCACgGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 121780 0.66 0.495463
Target:  5'- gGGUgGCC-GCGGCCGGcggGCUGgGCa- -3'
miRNA:   3'- -CCGgUGGaCGUCGGCCa--CGGCgCGga -5'
23613 3' -64.6 NC_005261.1 + 106039 0.66 0.495463
Target:  5'- cGCCACCgcGCuGcCCGGcccuagcGCCGCGUCg -3'
miRNA:   3'- cCGGUGGa-CGuC-GGCCa------CGGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 59286 0.66 0.495463
Target:  5'- cGCCGCCcaGCAGCgCGcaGUGCCccGCGUCa -3'
miRNA:   3'- cCGGUGGa-CGUCG-GC--CACGG--CGCGGa -5'
23613 3' -64.6 NC_005261.1 + 45617 0.66 0.495463
Target:  5'- cGGCgGCgCggcGCGGCgCGGcggGcCCGCGCCg -3'
miRNA:   3'- -CCGgUG-Ga--CGUCG-GCCa--C-GGCGCGGa -5'
23613 3' -64.6 NC_005261.1 + 29260 0.66 0.495463
Target:  5'- gGGCCGCC-GCcGCUGGaggGCC-CGCUg -3'
miRNA:   3'- -CCGGUGGaCGuCGGCCa--CGGcGCGGa -5'
23613 3' -64.6 NC_005261.1 + 87257 0.66 0.495463
Target:  5'- cGcCCACUUGCA--CGGUcGUCGCGCCg -3'
miRNA:   3'- cC-GGUGGACGUcgGCCA-CGGCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.