miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23613 5' -55.2 NC_005261.1 + 27998 0.66 0.895732
Target:  5'- cGCcGGCcUCUCCGcgaaaGGggGCCGGCGGGg -3'
miRNA:   3'- -CGuUCGcGGAGGU-----UCaaCGGUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 92916 0.66 0.895732
Target:  5'- aCGAGgGCCacgCCG---UGCCGGCGGAg -3'
miRNA:   3'- cGUUCgCGGa--GGUucaACGGUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 88871 0.66 0.895732
Target:  5'- cGCGGGacaGCCUCUccGUUGCggugguuagcgCGGCGGAc -3'
miRNA:   3'- -CGUUCg--CGGAGGuuCAACG-----------GUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 122393 0.66 0.895732
Target:  5'- -gGGGCGCUUgCCAAGcUUGCgCAGCa-- -3'
miRNA:   3'- cgUUCGCGGA-GGUUC-AACG-GUCGcuu -5'
23613 5' -55.2 NC_005261.1 + 13847 0.66 0.895732
Target:  5'- ---uGCGUCUCCucGUcGCCGGCGu- -3'
miRNA:   3'- cguuCGCGGAGGuuCAaCGGUCGCuu -5'
23613 5' -55.2 NC_005261.1 + 103650 0.66 0.895053
Target:  5'- aGCGGGCcaugcuaGCCUCCAGcGacGCCcGCGAGg -3'
miRNA:   3'- -CGUUCG-------CGGAGGUU-CaaCGGuCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 88792 0.66 0.888836
Target:  5'- cGCcGGCGCCgcgcagCAGGacGCCGGCGGc -3'
miRNA:   3'- -CGuUCGCGGag----GUUCaaCGGUCGCUu -5'
23613 5' -55.2 NC_005261.1 + 86338 0.66 0.888836
Target:  5'- --cAGCGCgUCCAugucGUUGCgccCGGCGAAg -3'
miRNA:   3'- cguUCGCGgAGGUu---CAACG---GUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 44880 0.66 0.888836
Target:  5'- cGCGAGCGCCg-CGGGgaugGCCGGgGc- -3'
miRNA:   3'- -CGUUCGCGGagGUUCaa--CGGUCgCuu -5'
23613 5' -55.2 NC_005261.1 + 32204 0.66 0.888836
Target:  5'- aGCugGCGCCcgaCGAGcUGCCGGCc-- -3'
miRNA:   3'- -CGuuCGCGGag-GUUCaACGGUCGcuu -5'
23613 5' -55.2 NC_005261.1 + 72833 0.66 0.881699
Target:  5'- cGCAAGgCgGUCggCCAGGgcGCCAGCGc- -3'
miRNA:   3'- -CGUUC-G-CGGa-GGUUCaaCGGUCGCuu -5'
23613 5' -55.2 NC_005261.1 + 3454 0.66 0.881699
Target:  5'- cGCGGGcCGCCgcgccgcgcgUCGAGUaccgcGCCAGCGGGg -3'
miRNA:   3'- -CGUUC-GCGGa---------GGUUCAa----CGGUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 39243 0.66 0.881699
Target:  5'- gGCGAG-GUCUCCGgcgaGGUcuCCAGCGAGg -3'
miRNA:   3'- -CGUUCgCGGAGGU----UCAacGGUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 123292 0.66 0.874326
Target:  5'- cGCcAGCGCCUCCGcGaUGUCcacgAGCGGc -3'
miRNA:   3'- -CGuUCGCGGAGGUuCaACGG----UCGCUu -5'
23613 5' -55.2 NC_005261.1 + 97849 0.66 0.874326
Target:  5'- gGCGGGCGCCgCCGcggcAGcgcgGCCGGCa-- -3'
miRNA:   3'- -CGUUCGCGGaGGU----UCaa--CGGUCGcuu -5'
23613 5' -55.2 NC_005261.1 + 76806 0.66 0.874326
Target:  5'- cGCGAGCGCUUCCu-GUaccucGUCAGCa-- -3'
miRNA:   3'- -CGUUCGCGGAGGuuCAa----CGGUCGcuu -5'
23613 5' -55.2 NC_005261.1 + 72477 0.66 0.874326
Target:  5'- cGCGAGCGCggccagcgCCAGGagcGCCGcGCGAAg -3'
miRNA:   3'- -CGUUCGCGga------GGUUCaa-CGGU-CGCUU- -5'
23613 5' -55.2 NC_005261.1 + 85544 0.66 0.866721
Target:  5'- cGCGGGCGgCUCCGucugcGgcGCC-GCGAGg -3'
miRNA:   3'- -CGUUCGCgGAGGUu----CaaCGGuCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 23171 0.66 0.866721
Target:  5'- gGCAGGCGCg-CCGGGggcgaCAGCGAGc -3'
miRNA:   3'- -CGUUCGCGgaGGUUCaacg-GUCGCUU- -5'
23613 5' -55.2 NC_005261.1 + 4157 0.66 0.866721
Target:  5'- aGCAGGCGCgccagCUgCAGGUccggGCCcGCGAGc -3'
miRNA:   3'- -CGUUCGCG-----GAgGUUCAa---CGGuCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.