miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23614 3' -52 NC_005261.1 + 28276 0.66 0.982792
Target:  5'- -cUGuUGcCGCCGCCGCGgcCGCGg--- -3'
miRNA:   3'- caAC-AC-GUGGCGGUGCauGUGCaacu -5'
23614 3' -52 NC_005261.1 + 115919 0.66 0.982792
Target:  5'- ----cGCcgGCCGCCGCGUccGCGCGcgGGg -3'
miRNA:   3'- caacaCG--UGGCGGUGCA--UGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 103915 0.66 0.982792
Target:  5'- ----cGCGCCGCCAgGUcggGCGCGg--- -3'
miRNA:   3'- caacaCGUGGCGGUgCA---UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 100689 0.66 0.982792
Target:  5'- --aGUGCACCgcgGCCGCG-GCGCGc--- -3'
miRNA:   3'- caaCACGUGG---CGGUGCaUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 81995 0.66 0.982792
Target:  5'- aGUUGUGCgcGCUGCCGuCGaagagcgGCcCGUUGAc -3'
miRNA:   3'- -CAACACG--UGGCGGU-GCa------UGuGCAACU- -5'
23614 3' -52 NC_005261.1 + 99354 0.66 0.980687
Target:  5'- ----aGCAgCGCgCACGUgacgagguccaGCGCGUUGAc -3'
miRNA:   3'- caacaCGUgGCG-GUGCA-----------UGUGCAACU- -5'
23614 3' -52 NC_005261.1 + 38558 0.66 0.980687
Target:  5'- ----cGCGCgGCCAUGcgGCGgGUUGAg -3'
miRNA:   3'- caacaCGUGgCGGUGCa-UGUgCAACU- -5'
23614 3' -52 NC_005261.1 + 39981 0.66 0.980687
Target:  5'- gGUUGcgcGCGCCGCCGgCGUGCgugaagGCGUa-- -3'
miRNA:   3'- -CAACa--CGUGGCGGU-GCAUG------UGCAacu -5'
23614 3' -52 NC_005261.1 + 54012 0.66 0.980687
Target:  5'- ----gGCGCCGCCGCGaGCGCu---- -3'
miRNA:   3'- caacaCGUGGCGGUGCaUGUGcaacu -5'
23614 3' -52 NC_005261.1 + 107928 0.66 0.980466
Target:  5'- --aGUGCcgcgcggaucGCCGCCACGUaguccguGCGCGg--- -3'
miRNA:   3'- caaCACG----------UGGCGGUGCA-------UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 58137 0.66 0.978395
Target:  5'- --cGUGgcCACCGCCACGUagaucuucacGCGCGa--- -3'
miRNA:   3'- caaCAC--GUGGCGGUGCA----------UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 69188 0.66 0.978395
Target:  5'- ----gGCACCGUCGCGgACGCGg--- -3'
miRNA:   3'- caacaCGUGGCGGUGCaUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 123193 0.66 0.975909
Target:  5'- --gGUGUgggcggacccaGCCGCCGCGUaaGCGCGg--- -3'
miRNA:   3'- caaCACG-----------UGGCGGUGCA--UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 30170 0.66 0.975909
Target:  5'- ----cGCGcCCGCCGCGcUGCGCGccGAg -3'
miRNA:   3'- caacaCGU-GGCGGUGC-AUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 39333 0.66 0.975909
Target:  5'- ----cGCGCCGCCGCGgccaagcugcGCGCGgcGGc -3'
miRNA:   3'- caacaCGUGGCGGUGCa---------UGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 100729 0.66 0.975909
Target:  5'- ----cGCGCCGCgCGCGcGCGCGgcGGc -3'
miRNA:   3'- caacaCGUGGCG-GUGCaUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 102060 0.66 0.975909
Target:  5'- -aUGUGCAUCaGCCGCGUcaGCugGc--- -3'
miRNA:   3'- caACACGUGG-CGGUGCA--UGugCaacu -5'
23614 3' -52 NC_005261.1 + 99495 0.66 0.975649
Target:  5'- ----aGCGCCGCCGCGUccuccgagggcccGCcCGUUGn -3'
miRNA:   3'- caacaCGUGGCGGUGCA-------------UGuGCAACu -5'
23614 3' -52 NC_005261.1 + 3456 0.66 0.973219
Target:  5'- ----cGgGCCGCCGCGccGCGCGUcGAg -3'
miRNA:   3'- caacaCgUGGCGGUGCa-UGUGCAaCU- -5'
23614 3' -52 NC_005261.1 + 3643 0.66 0.973219
Target:  5'- --gGUGCGCCGCUA---GCGCGUcUGGa -3'
miRNA:   3'- caaCACGUGGCGGUgcaUGUGCA-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.