miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23614 3' -52 NC_005261.1 + 82205 1.1 0.005357
Target:  5'- cGUUGUGCACCGCCACGUACACGUUGAg -3'
miRNA:   3'- -CAACACGUGGCGGUGCAUGUGCAACU- -5'
23614 3' -52 NC_005261.1 + 64424 0.77 0.544296
Target:  5'- --cGUcCACCGCCACGcGCGCGUUGu -3'
miRNA:   3'- caaCAcGUGGCGGUGCaUGUGCAACu -5'
23614 3' -52 NC_005261.1 + 133053 0.75 0.638911
Target:  5'- --cGUGCugCGCgGCGUugGCGgcGAg -3'
miRNA:   3'- caaCACGugGCGgUGCAugUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 133831 0.74 0.670645
Target:  5'- ---cUGCGCgGCCGCGUGCGCGccgUGGc -3'
miRNA:   3'- caacACGUGgCGGUGCAUGUGCa--ACU- -5'
23614 3' -52 NC_005261.1 + 115829 0.73 0.732935
Target:  5'- --gGUGCGCCaGCUugG-GCGCGUUGGc -3'
miRNA:   3'- caaCACGUGG-CGGugCaUGUGCAACU- -5'
23614 3' -52 NC_005261.1 + 29980 0.73 0.743047
Target:  5'- --gGUGCGCCGCCggcGCGUccggcagcgGCGCGUcUGAg -3'
miRNA:   3'- caaCACGUGGCGG---UGCA---------UGUGCA-ACU- -5'
23614 3' -52 NC_005261.1 + 98213 0.73 0.753056
Target:  5'- ----gGCGCCGCCACGgcaGCGCGgcGGg -3'
miRNA:   3'- caacaCGUGGCGGUGCa--UGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 106061 0.72 0.801182
Target:  5'- ----aGCGCCGCguCGUACugGUUGc -3'
miRNA:   3'- caacaCGUGGCGguGCAUGugCAACu -5'
23614 3' -52 NC_005261.1 + 13659 0.72 0.810354
Target:  5'- --cGUGcCGCCGCCGCGggggggGCGCGggGc -3'
miRNA:   3'- caaCAC-GUGGCGGUGCa-----UGUGCaaCu -5'
23614 3' -52 NC_005261.1 + 116511 0.72 0.810354
Target:  5'- ----aGCGCCGCCGCGgcgGCGCGa--- -3'
miRNA:   3'- caacaCGUGGCGGUGCa--UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 126759 0.71 0.828169
Target:  5'- ----gGCACCGCCAgGUACAUGg--- -3'
miRNA:   3'- caacaCGUGGCGGUgCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 90459 0.71 0.845218
Target:  5'- uUUGUGCG-CGCgCACGUGCGCGa--- -3'
miRNA:   3'- cAACACGUgGCG-GUGCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 110328 0.7 0.861438
Target:  5'- ----cGCGCCGCCGCGgACGCGcUGc -3'
miRNA:   3'- caacaCGUGGCGGUGCaUGUGCaACu -5'
23614 3' -52 NC_005261.1 + 68876 0.7 0.897999
Target:  5'- -cUGUGCGCCGUCguGCGcUGCGCGg--- -3'
miRNA:   3'- caACACGUGGCGG--UGC-AUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 97853 0.7 0.897999
Target:  5'- ----gGCGCCGCCGCGgcaGCGCGg--- -3'
miRNA:   3'- caacaCGUGGCGGUGCa--UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 46731 0.69 0.904585
Target:  5'- --cGUaCGCCGgCGCGUGCACGUg-- -3'
miRNA:   3'- caaCAcGUGGCgGUGCAUGUGCAacu -5'
23614 3' -52 NC_005261.1 + 31342 0.69 0.904585
Target:  5'- ----cGCGCCGCUGCGgcgGCGCGUg-- -3'
miRNA:   3'- caacaCGUGGCGGUGCa--UGUGCAacu -5'
23614 3' -52 NC_005261.1 + 64283 0.69 0.910919
Target:  5'- --gGUGCAgCGCCGCGUccagcgugcGCAUGUUu- -3'
miRNA:   3'- caaCACGUgGCGGUGCA---------UGUGCAAcu -5'
23614 3' -52 NC_005261.1 + 44872 0.69 0.922825
Target:  5'- ----aGCGCCGCCGCGagcgcCGCGggGAu -3'
miRNA:   3'- caacaCGUGGCGGUGCau---GUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 121924 0.69 0.928394
Target:  5'- --cGUGCGCCGCCACGcucuucagcaGCGCcagcUUGAa -3'
miRNA:   3'- caaCACGUGGCGGUGCa---------UGUGc---AACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.