miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23614 3' -52 NC_005261.1 + 118202 0.66 0.973219
Target:  5'- ----cGCGCCuGCCGCGcUGCGCGggGc -3'
miRNA:   3'- caacaCGUGG-CGGUGC-AUGUGCaaCu -5'
23614 3' -52 NC_005261.1 + 104884 0.67 0.9672
Target:  5'- --cGUcgauCGCCGCCGCGUGCGCccgGAc -3'
miRNA:   3'- caaCAc---GUGGCGGUGCAUGUGcaaCU- -5'
23614 3' -52 NC_005261.1 + 102840 0.67 0.963856
Target:  5'- ----cGCGCCgcGCCACGUGCugGg--- -3'
miRNA:   3'- caacaCGUGG--CGGUGCAUGugCaacu -5'
23614 3' -52 NC_005261.1 + 10426 0.67 0.963856
Target:  5'- --gGUGCugUGcCCACGgACGCGUgcUGGg -3'
miRNA:   3'- caaCACGugGC-GGUGCaUGUGCA--ACU- -5'
23614 3' -52 NC_005261.1 + 2375 0.67 0.960281
Target:  5'- ----cGCGCCGCCGCagcgGCGCGcUGGc -3'
miRNA:   3'- caacaCGUGGCGGUGca--UGUGCaACU- -5'
23614 3' -52 NC_005261.1 + 73382 0.67 0.960281
Target:  5'- ----aGCGCgGCCACGcGCGCGUg-- -3'
miRNA:   3'- caacaCGUGgCGGUGCaUGUGCAacu -5'
23614 3' -52 NC_005261.1 + 70903 0.67 0.960281
Target:  5'- --cGUGCACuugcgCGCCACGUcccGCGCGa--- -3'
miRNA:   3'- caaCACGUG-----GCGGUGCA---UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 99529 0.67 0.956469
Target:  5'- --cGUGCACCGUCGaggGCGCGUc-- -3'
miRNA:   3'- caaCACGUGGCGGUgcaUGUGCAacu -5'
23614 3' -52 NC_005261.1 + 9167 0.67 0.956469
Target:  5'- -cUG-GCGCCGCCcggccagguACGUGgGCGggGAc -3'
miRNA:   3'- caACaCGUGGCGG---------UGCAUgUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 51812 0.67 0.956469
Target:  5'- --cGUGCugCGgCugGUGCGCGc--- -3'
miRNA:   3'- caaCACGugGCgGugCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 53120 0.67 0.956469
Target:  5'- -cUGcGCGCCGCCaacagggcgGCGUACGCGc--- -3'
miRNA:   3'- caACaCGUGGCGG---------UGCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 20759 0.68 0.952415
Target:  5'- uUUG-GCGCCGCCGacuUGUACGCGc--- -3'
miRNA:   3'- cAACaCGUGGCGGU---GCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 47942 0.68 0.952415
Target:  5'- ----cGCGCCGCgCGCGaGCGCGUUc- -3'
miRNA:   3'- caacaCGUGGCG-GUGCaUGUGCAAcu -5'
23614 3' -52 NC_005261.1 + 75748 0.68 0.949865
Target:  5'- --gGUGCGCCGCCugcuguggaacggcaACGUGUACGcgGAc -3'
miRNA:   3'- caaCACGUGGCGG---------------UGCAUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 40408 0.68 0.948115
Target:  5'- ---cUGCGCgacaggGCCACGUACacgGCGUUGAg -3'
miRNA:   3'- caacACGUGg-----CGGUGCAUG---UGCAACU- -5'
23614 3' -52 NC_005261.1 + 47005 0.68 0.948115
Target:  5'- ----cGCGCCGCCGCG-AUGCGgcGGu -3'
miRNA:   3'- caacaCGUGGCGGUGCaUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 95662 0.68 0.948115
Target:  5'- ----gGCGCCGCgACGgGCGCGggugUGAg -3'
miRNA:   3'- caacaCGUGGCGgUGCaUGUGCa---ACU- -5'
23614 3' -52 NC_005261.1 + 85431 0.68 0.938764
Target:  5'- ----cGCGCCGCCucCG-ACAUGUUGGc -3'
miRNA:   3'- caacaCGUGGCGGu-GCaUGUGCAACU- -5'
23614 3' -52 NC_005261.1 + 112015 0.68 0.93214
Target:  5'- --cGUGCggaucgccgcaacaGCCGCCACGUGgACGa--- -3'
miRNA:   3'- caaCACG--------------UGGCGGUGCAUgUGCaacu -5'
23614 3' -52 NC_005261.1 + 121924 0.69 0.928394
Target:  5'- --cGUGCGCCGCCACGcucuucagcaGCGCcagcUUGAa -3'
miRNA:   3'- caaCACGUGGCGGUGCa---------UGUGc---AACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.