Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23614 | 3' | -52 | NC_005261.1 | + | 53120 | 0.67 | 0.956469 |
Target: 5'- -cUGcGCGCCGCCaacagggcgGCGUACGCGc--- -3' miRNA: 3'- caACaCGUGGCGG---------UGCAUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 54012 | 0.66 | 0.980687 |
Target: 5'- ----gGCGCCGCCGCGaGCGCu---- -3' miRNA: 3'- caacaCGUGGCGGUGCaUGUGcaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 58137 | 0.66 | 0.978395 |
Target: 5'- --cGUGgcCACCGCCACGUagaucuucacGCGCGa--- -3' miRNA: 3'- caaCAC--GUGGCGGUGCA----------UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 64283 | 0.69 | 0.910919 |
Target: 5'- --gGUGCAgCGCCGCGUccagcgugcGCAUGUUu- -3' miRNA: 3'- caaCACGUgGCGGUGCA---------UGUGCAAcu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 64424 | 0.77 | 0.544296 |
Target: 5'- --cGUcCACCGCCACGcGCGCGUUGu -3' miRNA: 3'- caaCAcGUGGCGGUGCaUGUGCAACu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 68876 | 0.7 | 0.897999 |
Target: 5'- -cUGUGCGCCGUCguGCGcUGCGCGg--- -3' miRNA: 3'- caACACGUGGCGG--UGC-AUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 69188 | 0.66 | 0.978395 |
Target: 5'- ----gGCACCGUCGCGgACGCGg--- -3' miRNA: 3'- caacaCGUGGCGGUGCaUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 70903 | 0.67 | 0.960281 |
Target: 5'- --cGUGCACuugcgCGCCACGUcccGCGCGa--- -3' miRNA: 3'- caaCACGUG-----GCGGUGCA---UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 73382 | 0.67 | 0.960281 |
Target: 5'- ----aGCGCgGCCACGcGCGCGUg-- -3' miRNA: 3'- caacaCGUGgCGGUGCaUGUGCAacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 75748 | 0.68 | 0.949865 |
Target: 5'- --gGUGCGCCGCCugcuguggaacggcaACGUGUACGcgGAc -3' miRNA: 3'- caaCACGUGGCGG---------------UGCAUGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 81995 | 0.66 | 0.982792 |
Target: 5'- aGUUGUGCgcGCUGCCGuCGaagagcgGCcCGUUGAc -3' miRNA: 3'- -CAACACG--UGGCGGU-GCa------UGuGCAACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 82205 | 1.1 | 0.005357 |
Target: 5'- cGUUGUGCACCGCCACGUACACGUUGAg -3' miRNA: 3'- -CAACACGUGGCGGUGCAUGUGCAACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 85431 | 0.68 | 0.938764 |
Target: 5'- ----cGCGCCGCCucCG-ACAUGUUGGc -3' miRNA: 3'- caacaCGUGGCGGu-GCaUGUGCAACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 90459 | 0.71 | 0.845218 |
Target: 5'- uUUGUGCG-CGCgCACGUGCGCGa--- -3' miRNA: 3'- cAACACGUgGCG-GUGCAUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 95662 | 0.68 | 0.948115 |
Target: 5'- ----gGCGCCGCgACGgGCGCGggugUGAg -3' miRNA: 3'- caacaCGUGGCGgUGCaUGUGCa---ACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 97853 | 0.7 | 0.897999 |
Target: 5'- ----gGCGCCGCCGCGgcaGCGCGg--- -3' miRNA: 3'- caacaCGUGGCGGUGCa--UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 98213 | 0.73 | 0.753056 |
Target: 5'- ----gGCGCCGCCACGgcaGCGCGgcGGg -3' miRNA: 3'- caacaCGUGGCGGUGCa--UGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 99354 | 0.66 | 0.980687 |
Target: 5'- ----aGCAgCGCgCACGUgacgagguccaGCGCGUUGAc -3' miRNA: 3'- caacaCGUgGCG-GUGCA-----------UGUGCAACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 99495 | 0.66 | 0.975649 |
Target: 5'- ----aGCGCCGCCGCGUccuccgagggcccGCcCGUUGn -3' miRNA: 3'- caacaCGUGGCGGUGCA-------------UGuGCAACu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 99529 | 0.67 | 0.956469 |
Target: 5'- --cGUGCACCGUCGaggGCGCGUc-- -3' miRNA: 3'- caaCACGUGGCGGUgcaUGUGCAacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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