miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23614 3' -52 NC_005261.1 + 100689 0.66 0.982792
Target:  5'- --aGUGCACCgcgGCCGCG-GCGCGc--- -3'
miRNA:   3'- caaCACGUGG---CGGUGCaUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 103915 0.66 0.982792
Target:  5'- ----cGCGCCGCCAgGUcggGCGCGg--- -3'
miRNA:   3'- caacaCGUGGCGGUgCA---UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 115919 0.66 0.982792
Target:  5'- ----cGCcgGCCGCCGCGUccGCGCGcgGGg -3'
miRNA:   3'- caacaCG--UGGCGGUGCA--UGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 100729 0.66 0.975909
Target:  5'- ----cGCGCCGCgCGCGcGCGCGgcGGc -3'
miRNA:   3'- caacaCGUGGCG-GUGCaUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 39333 0.66 0.975909
Target:  5'- ----cGCGCCGCCGCGgccaagcugcGCGCGgcGGc -3'
miRNA:   3'- caacaCGUGGCGGUGCa---------UGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 30170 0.66 0.975909
Target:  5'- ----cGCGcCCGCCGCGcUGCGCGccGAg -3'
miRNA:   3'- caacaCGU-GGCGGUGC-AUGUGCaaCU- -5'
23614 3' -52 NC_005261.1 + 53120 0.67 0.956469
Target:  5'- -cUGcGCGCCGCCaacagggcgGCGUACGCGc--- -3'
miRNA:   3'- caACaCGUGGCGG---------UGCAUGUGCaacu -5'
23614 3' -52 NC_005261.1 + 70903 0.67 0.960281
Target:  5'- --cGUGCACuugcgCGCCACGUcccGCGCGa--- -3'
miRNA:   3'- caaCACGUG-----GCGGUGCA---UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 73382 0.67 0.960281
Target:  5'- ----aGCGCgGCCACGcGCGCGUg-- -3'
miRNA:   3'- caacaCGUGgCGGUGCaUGUGCAacu -5'
23614 3' -52 NC_005261.1 + 2375 0.67 0.960281
Target:  5'- ----cGCGCCGCCGCagcgGCGCGcUGGc -3'
miRNA:   3'- caacaCGUGGCGGUGca--UGUGCaACU- -5'
23614 3' -52 NC_005261.1 + 10426 0.67 0.963856
Target:  5'- --gGUGCugUGcCCACGgACGCGUgcUGGg -3'
miRNA:   3'- caaCACGugGC-GGUGCaUGUGCA--ACU- -5'
23614 3' -52 NC_005261.1 + 102840 0.67 0.963856
Target:  5'- ----cGCGCCgcGCCACGUGCugGg--- -3'
miRNA:   3'- caacaCGUGG--CGGUGCAUGugCaacu -5'
23614 3' -52 NC_005261.1 + 104884 0.67 0.9672
Target:  5'- --cGUcgauCGCCGCCGCGUGCGCccgGAc -3'
miRNA:   3'- caaCAc---GUGGCGGUGCAUGUGcaaCU- -5'
23614 3' -52 NC_005261.1 + 3643 0.66 0.973219
Target:  5'- --gGUGCGCCGCUA---GCGCGUcUGGa -3'
miRNA:   3'- caaCACGUGGCGGUgcaUGUGCA-ACU- -5'
23614 3' -52 NC_005261.1 + 3456 0.66 0.973219
Target:  5'- ----cGgGCCGCCGCGccGCGCGUcGAg -3'
miRNA:   3'- caacaCgUGGCGGUGCa-UGUGCAaCU- -5'
23614 3' -52 NC_005261.1 + 118202 0.66 0.973219
Target:  5'- ----cGCGCCuGCCGCGcUGCGCGggGc -3'
miRNA:   3'- caacaCGUGG-CGGUGC-AUGUGCaaCu -5'
23614 3' -52 NC_005261.1 + 99495 0.66 0.975649
Target:  5'- ----aGCGCCGCCGCGUccuccgagggcccGCcCGUUGn -3'
miRNA:   3'- caacaCGUGGCGGUGCA-------------UGuGCAACu -5'
23614 3' -52 NC_005261.1 + 123193 0.66 0.975909
Target:  5'- --gGUGUgggcggacccaGCCGCCGCGUaaGCGCGg--- -3'
miRNA:   3'- caaCACG-----------UGGCGGUGCA--UGUGCaacu -5'
23614 3' -52 NC_005261.1 + 28276 0.66 0.982792
Target:  5'- -cUGuUGcCGCCGCCGCGgcCGCGg--- -3'
miRNA:   3'- caAC-AC-GUGGCGGUGCauGUGCaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.