Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23614 | 3' | -52 | NC_005261.1 | + | 100689 | 0.66 | 0.982792 |
Target: 5'- --aGUGCACCgcgGCCGCG-GCGCGc--- -3' miRNA: 3'- caaCACGUGG---CGGUGCaUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 103915 | 0.66 | 0.982792 |
Target: 5'- ----cGCGCCGCCAgGUcggGCGCGg--- -3' miRNA: 3'- caacaCGUGGCGGUgCA---UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 115919 | 0.66 | 0.982792 |
Target: 5'- ----cGCcgGCCGCCGCGUccGCGCGcgGGg -3' miRNA: 3'- caacaCG--UGGCGGUGCA--UGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 100729 | 0.66 | 0.975909 |
Target: 5'- ----cGCGCCGCgCGCGcGCGCGgcGGc -3' miRNA: 3'- caacaCGUGGCG-GUGCaUGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 39333 | 0.66 | 0.975909 |
Target: 5'- ----cGCGCCGCCGCGgccaagcugcGCGCGgcGGc -3' miRNA: 3'- caacaCGUGGCGGUGCa---------UGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 30170 | 0.66 | 0.975909 |
Target: 5'- ----cGCGcCCGCCGCGcUGCGCGccGAg -3' miRNA: 3'- caacaCGU-GGCGGUGC-AUGUGCaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 53120 | 0.67 | 0.956469 |
Target: 5'- -cUGcGCGCCGCCaacagggcgGCGUACGCGc--- -3' miRNA: 3'- caACaCGUGGCGG---------UGCAUGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 70903 | 0.67 | 0.960281 |
Target: 5'- --cGUGCACuugcgCGCCACGUcccGCGCGa--- -3' miRNA: 3'- caaCACGUG-----GCGGUGCA---UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 73382 | 0.67 | 0.960281 |
Target: 5'- ----aGCGCgGCCACGcGCGCGUg-- -3' miRNA: 3'- caacaCGUGgCGGUGCaUGUGCAacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 2375 | 0.67 | 0.960281 |
Target: 5'- ----cGCGCCGCCGCagcgGCGCGcUGGc -3' miRNA: 3'- caacaCGUGGCGGUGca--UGUGCaACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 10426 | 0.67 | 0.963856 |
Target: 5'- --gGUGCugUGcCCACGgACGCGUgcUGGg -3' miRNA: 3'- caaCACGugGC-GGUGCaUGUGCA--ACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 102840 | 0.67 | 0.963856 |
Target: 5'- ----cGCGCCgcGCCACGUGCugGg--- -3' miRNA: 3'- caacaCGUGG--CGGUGCAUGugCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 104884 | 0.67 | 0.9672 |
Target: 5'- --cGUcgauCGCCGCCGCGUGCGCccgGAc -3' miRNA: 3'- caaCAc---GUGGCGGUGCAUGUGcaaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 3643 | 0.66 | 0.973219 |
Target: 5'- --gGUGCGCCGCUA---GCGCGUcUGGa -3' miRNA: 3'- caaCACGUGGCGGUgcaUGUGCA-ACU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 3456 | 0.66 | 0.973219 |
Target: 5'- ----cGgGCCGCCGCGccGCGCGUcGAg -3' miRNA: 3'- caacaCgUGGCGGUGCa-UGUGCAaCU- -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 118202 | 0.66 | 0.973219 |
Target: 5'- ----cGCGCCuGCCGCGcUGCGCGggGc -3' miRNA: 3'- caacaCGUGG-CGGUGC-AUGUGCaaCu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 99495 | 0.66 | 0.975649 |
Target: 5'- ----aGCGCCGCCGCGUccuccgagggcccGCcCGUUGn -3' miRNA: 3'- caacaCGUGGCGGUGCA-------------UGuGCAACu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 123193 | 0.66 | 0.975909 |
Target: 5'- --gGUGUgggcggacccaGCCGCCGCGUaaGCGCGg--- -3' miRNA: 3'- caaCACG-----------UGGCGGUGCA--UGUGCaacu -5' |
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23614 | 3' | -52 | NC_005261.1 | + | 28276 | 0.66 | 0.982792 |
Target: 5'- -cUGuUGcCGCCGCCGCGgcCGCGg--- -3' miRNA: 3'- caAC-AC-GUGGCGGUGCauGUGCaacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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