miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23614 5' -55.5 NC_005261.1 + 69533 0.66 0.916364
Target:  5'- gCGcGGGCGCUgGCGCGCgcgcuGGGGaCggCg -3'
miRNA:   3'- -GCaUCUGCGAgUGCGCG-----UCCCaGaaG- -5'
23614 5' -55.5 NC_005261.1 + 75591 0.66 0.914605
Target:  5'- ---cGGCGCUCGCGCGCGccgcggacgcggacGGcGUCg-- -3'
miRNA:   3'- gcauCUGCGAGUGCGCGU--------------CC-CAGaag -5'
23614 5' -55.5 NC_005261.1 + 128101 0.66 0.904226
Target:  5'- --cGGGCGagcggCGCgGCGCGGGGUCg-- -3'
miRNA:   3'- gcaUCUGCga---GUG-CGCGUCCCAGaag -5'
23614 5' -55.5 NC_005261.1 + 105551 0.66 0.897799
Target:  5'- -cUGGcCGCaCGCGCGCAGGGcCa-- -3'
miRNA:   3'- gcAUCuGCGaGUGCGCGUCCCaGaag -5'
23614 5' -55.5 NC_005261.1 + 14149 0.66 0.897799
Target:  5'- gCGaGGACGCUCcagccgcgaacgGCGCGCGucucggggcgcGGGUCa-- -3'
miRNA:   3'- -GCaUCUGCGAG------------UGCGCGU-----------CCCAGaag -5'
23614 5' -55.5 NC_005261.1 + 125517 0.66 0.897143
Target:  5'- aGUGGcuuuuauACGCUCGCGCcgcccGCAGGG-CggCg -3'
miRNA:   3'- gCAUC-------UGCGAGUGCG-----CGUCCCaGaaG- -5'
23614 5' -55.5 NC_005261.1 + 105123 0.66 0.891136
Target:  5'- gCGcGGGCGCgggccgccggCGCGCGCA-GGUCcUCg -3'
miRNA:   3'- -GCaUCUGCGa---------GUGCGCGUcCCAGaAG- -5'
23614 5' -55.5 NC_005261.1 + 72616 0.67 0.877119
Target:  5'- --cGGGCGggCGgGCGCAGGGgcggCUUUa -3'
miRNA:   3'- gcaUCUGCgaGUgCGCGUCCCa---GAAG- -5'
23614 5' -55.5 NC_005261.1 + 40354 0.67 0.877119
Target:  5'- uCGUGGG-GCUCGCGCaGC-GGGUUgaggUUCa -3'
miRNA:   3'- -GCAUCUgCGAGUGCG-CGuCCCAG----AAG- -5'
23614 5' -55.5 NC_005261.1 + 73659 0.67 0.862212
Target:  5'- gGUAGACGCgCACGaCGCGGaGGg---- -3'
miRNA:   3'- gCAUCUGCGaGUGC-GCGUC-CCagaag -5'
23614 5' -55.5 NC_005261.1 + 73773 0.67 0.854438
Target:  5'- aCG-AGGCGCUggccugcgacgUGCGCGCGGcGGUCggCg -3'
miRNA:   3'- -GCaUCUGCGA-----------GUGCGCGUC-CCAGaaG- -5'
23614 5' -55.5 NC_005261.1 + 125940 0.68 0.821364
Target:  5'- gGUAGcCGCUg--GCGCGGGGUCg-- -3'
miRNA:   3'- gCAUCuGCGAgugCGCGUCCCAGaag -5'
23614 5' -55.5 NC_005261.1 + 40295 0.68 0.821364
Target:  5'- uGUGGACGUUCucguCGCGgAGGGcggCUa- -3'
miRNA:   3'- gCAUCUGCGAGu---GCGCgUCCCa--GAag -5'
23614 5' -55.5 NC_005261.1 + 17476 0.68 0.803744
Target:  5'- --cAGACGCggGCGCGCcggGGGGUCc-- -3'
miRNA:   3'- gcaUCUGCGagUGCGCG---UCCCAGaag -5'
23614 5' -55.5 NC_005261.1 + 104206 0.69 0.776151
Target:  5'- gCGUccAGGCGCUCGCGCGCGGcG-Cg-- -3'
miRNA:   3'- -GCA--UCUGCGAGUGCGCGUCcCaGaag -5'
23614 5' -55.5 NC_005261.1 + 120088 0.69 0.757083
Target:  5'- cCGUGGAgGCUCggcacGCGCGCGacGUCUUUa -3'
miRNA:   3'- -GCAUCUgCGAG-----UGCGCGUccCAGAAG- -5'
23614 5' -55.5 NC_005261.1 + 35460 0.7 0.717675
Target:  5'- -cUAGGCGCggcgCGCGCGCgucccGGGGUCc-- -3'
miRNA:   3'- gcAUCUGCGa---GUGCGCG-----UCCCAGaag -5'
23614 5' -55.5 NC_005261.1 + 31590 0.7 0.707612
Target:  5'- aCGUgAGcGCGCUCgGCGCGCAGGGcgugCUg- -3'
miRNA:   3'- -GCA-UC-UGCGAG-UGCGCGUCCCa---GAag -5'
23614 5' -55.5 NC_005261.1 + 105299 0.71 0.65651
Target:  5'- --cGGGCGCgcgaGCGCGGGGUCcUCg -3'
miRNA:   3'- gcaUCUGCGagugCGCGUCCCAGaAG- -5'
23614 5' -55.5 NC_005261.1 + 120952 0.71 0.646194
Target:  5'- gGUGGAgGCUCGCGCcccGCGGGG-Cg-- -3'
miRNA:   3'- gCAUCUgCGAGUGCG---CGUCCCaGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.