Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23614 | 5' | -55.5 | NC_005261.1 | + | 105123 | 0.66 | 0.891136 |
Target: 5'- gCGcGGGCGCgggccgccggCGCGCGCA-GGUCcUCg -3' miRNA: 3'- -GCaUCUGCGa---------GUGCGCGUcCCAGaAG- -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 72616 | 0.67 | 0.877119 |
Target: 5'- --cGGGCGggCGgGCGCAGGGgcggCUUUa -3' miRNA: 3'- gcaUCUGCgaGUgCGCGUCCCa---GAAG- -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 40354 | 0.67 | 0.877119 |
Target: 5'- uCGUGGG-GCUCGCGCaGC-GGGUUgaggUUCa -3' miRNA: 3'- -GCAUCUgCGAGUGCG-CGuCCCAG----AAG- -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 73659 | 0.67 | 0.862212 |
Target: 5'- gGUAGACGCgCACGaCGCGGaGGg---- -3' miRNA: 3'- gCAUCUGCGaGUGC-GCGUC-CCagaag -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 73773 | 0.67 | 0.854438 |
Target: 5'- aCG-AGGCGCUggccugcgacgUGCGCGCGGcGGUCggCg -3' miRNA: 3'- -GCaUCUGCGA-----------GUGCGCGUC-CCAGaaG- -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 125940 | 0.68 | 0.821364 |
Target: 5'- gGUAGcCGCUg--GCGCGGGGUCg-- -3' miRNA: 3'- gCAUCuGCGAgugCGCGUCCCAGaag -5' |
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23614 | 5' | -55.5 | NC_005261.1 | + | 82243 | 1.1 | 0.002621 |
Target: 5'- cCGUAGACGCUCACGCGCAGGGUCUUCu -3' miRNA: 3'- -GCAUCUGCGAGUGCGCGUCCCAGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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