Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23615 | 3' | -53.9 | NC_005261.1 | + | 81562 | 1.08 | 0.004653 |
Target: 5'- gAACACGUCCCGGUCGUAGAUGACGACg -3' miRNA: 3'- -UUGUGCAGGGCCAGCAUCUACUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 138028 | 0.78 | 0.386513 |
Target: 5'- cGGCGCGgCCCGG-CGgcGGUGGCGGCg -3' miRNA: 3'- -UUGUGCaGGGCCaGCauCUACUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 357 | 0.78 | 0.386513 |
Target: 5'- cGGCGCGgCCCGG-CGgcGGUGGCGGCg -3' miRNA: 3'- -UUGUGCaGGGCCaGCauCUACUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 53255 | 0.76 | 0.458303 |
Target: 5'- cGCGCGUCCCGGUCGcAGAccagcaUGuCGAUg -3' miRNA: 3'- uUGUGCAGGGCCAGCaUCU------ACuGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 86534 | 0.75 | 0.50661 |
Target: 5'- cAGCGCGgguUCCCGGccaCGUAGggGGCGGCg -3' miRNA: 3'- -UUGUGC---AGGGCCa--GCAUCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 121048 | 0.71 | 0.771659 |
Target: 5'- cACACGUCgCGGUUGUGGcgcgcgguGUGcGCGGCg -3' miRNA: 3'- uUGUGCAGgGCCAGCAUC--------UAC-UGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 123683 | 0.69 | 0.859319 |
Target: 5'- cGCACGUCCCGGcgcucagCGUGGGccGCGuACu -3' miRNA: 3'- uUGUGCAGGGCCa------GCAUCUacUGC-UG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 125402 | 0.69 | 0.867037 |
Target: 5'- -gUACGUUCCGGagCGgcGcgGGCGGCg -3' miRNA: 3'- uuGUGCAGGGCCa-GCauCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 105852 | 0.68 | 0.881809 |
Target: 5'- -cCGCGUccgCCCGGUCGgcGAUG-CGGu -3' miRNA: 3'- uuGUGCA---GGGCCAGCauCUACuGCUg -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 104634 | 0.68 | 0.888852 |
Target: 5'- gAGCACcaUCCCGGagG-AGGUGACGAa -3' miRNA: 3'- -UUGUGc-AGGGCCagCaUCUACUGCUg -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 13072 | 0.68 | 0.902228 |
Target: 5'- gGGCGCGUCcgCCGGccCGUcGGcgGGCGGCg -3' miRNA: 3'- -UUGUGCAG--GGCCa-GCA-UCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 57502 | 0.67 | 0.911016 |
Target: 5'- gGGCACGUCCCGG-CGgcGGgccuucuuccacagGcACGGCg -3' miRNA: 3'- -UUGUGCAGGGCCaGCauCUa-------------C-UGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 102085 | 0.67 | 0.914635 |
Target: 5'- -cCACGUCCgCGGUCG-GGAacagGGcCGACa -3' miRNA: 3'- uuGUGCAGG-GCCAGCaUCUa---CU-GCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 87534 | 0.67 | 0.92047 |
Target: 5'- gAACACGUUCgGGUgGUAG-UGGCugGGCg -3' miRNA: 3'- -UUGUGCAGGgCCAgCAUCuACUG--CUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 69297 | 0.67 | 0.926057 |
Target: 5'- cGGCGCGgggCgCCGGUggcggcgggagCGgGGGUGACGGCg -3' miRNA: 3'- -UUGUGCa--G-GGCCA-----------GCaUCUACUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 56558 | 0.67 | 0.926057 |
Target: 5'- gGGCACGUCCuucucgcaccuCGG-CGgcGAcGACGGCg -3' miRNA: 3'- -UUGUGCAGG-----------GCCaGCauCUaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 32469 | 0.66 | 0.936484 |
Target: 5'- gGGCACGgacucgggcuUCCCGGggcCGgcGAcGGCGGCa -3' miRNA: 3'- -UUGUGC----------AGGGCCa--GCauCUaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 47877 | 0.66 | 0.945923 |
Target: 5'- cGGCAgCGUCCgGGgagCGgcGgcGGCGGCg -3' miRNA: 3'- -UUGU-GCAGGgCCa--GCauCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 71388 | 0.66 | 0.945923 |
Target: 5'- -cCGCGaCCCGGUacgCGUGGuaGGCGGCg -3' miRNA: 3'- uuGUGCaGGGCCA---GCAUCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 73963 | 0.66 | 0.949852 |
Target: 5'- gGGCGCG-CCCGGgccgucugccucaUCGUGGAgcUGAaGACg -3' miRNA: 3'- -UUGUGCaGGGCC-------------AGCAUCU--ACUgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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