Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 128481 | 0.66 | 0.950277 |
|
Target: 5'- gAGCGCGacaUCCUcGUCGUGGAgcuCGACg -3' miRNA: 3'- -UUGUGC---AGGGcCAGCAUCUacuGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 80676 | 0.66 | 0.95439 |
|
Target: 5'- cGCGcCGUCgCGGagccCGUAGAagGGCGACa -3' miRNA: 3'- uUGU-GCAGgGCCa---GCAUCUa-CUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 76134 | 0.66 | 0.95439 |
|
Target: 5'- --gGCG-CCC-GUCGUGGAggucgUGGCGGCg -3' miRNA: 3'- uugUGCaGGGcCAGCAUCU-----ACUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 23697 | 0.66 | 0.95439 |
|
Target: 5'- cGACGCGaggcccgCCCGGUCGgguggcaagcGGGUGGCcGCg -3' miRNA: 3'- -UUGUGCa------GGGCCAGCa---------UCUACUGcUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 23355 | 0.66 | 0.957128 |
|
Target: 5'- cGCGCGUgUCGGcCGUGacaaacgccgagccGGUGGCGAUg -3' miRNA: 3'- uUGUGCAgGGCCaGCAU--------------CUACUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 32398 | 0.66 | 0.958267 |
|
Target: 5'- --gGCGUCCCGGagcgCGUGccgccGccGGCGACg -3' miRNA: 3'- uugUGCAGGGCCa---GCAU-----CuaCUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 98292 | 0.66 | 0.958267 |
|
Target: 5'- cGGCGCGUCCgCGGccUCGggGGcgGGCGcCg -3' miRNA: 3'- -UUGUGCAGG-GCC--AGCa-UCuaCUGCuG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 135781 | 0.66 | 0.958267 |
|
Target: 5'- gAGCGCGUgCCGcuGUCGgAGGUGACcgugGGCg -3' miRNA: 3'- -UUGUGCAgGGC--CAGCaUCUACUG----CUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home