Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23615 | 3' | -53.9 | NC_005261.1 | + | 104634 | 0.68 | 0.888852 |
Target: 5'- gAGCACcaUCCCGGagG-AGGUGACGAa -3' miRNA: 3'- -UUGUGc-AGGGCCagCaUCUACUGCUg -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 105852 | 0.68 | 0.881809 |
Target: 5'- -cCGCGUccgCCCGGUCGgcGAUG-CGGu -3' miRNA: 3'- uuGUGCA---GGGCCAGCauCUACuGCUg -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 121048 | 0.71 | 0.771659 |
Target: 5'- cACACGUCgCGGUUGUGGcgcgcgguGUGcGCGGCg -3' miRNA: 3'- uUGUGCAGgGCCAGCAUC--------UAC-UGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 123683 | 0.69 | 0.859319 |
Target: 5'- cGCACGUCCCGGcgcucagCGUGGGccGCGuACu -3' miRNA: 3'- uUGUGCAGGGCCa------GCAUCUacUGC-UG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 125402 | 0.69 | 0.867037 |
Target: 5'- -gUACGUUCCGGagCGgcGcgGGCGGCg -3' miRNA: 3'- uuGUGCAGGGCCa-GCauCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 128481 | 0.66 | 0.950277 |
Target: 5'- gAGCGCGacaUCCUcGUCGUGGAgcuCGACg -3' miRNA: 3'- -UUGUGC---AGGGcCAGCAUCUacuGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 135781 | 0.66 | 0.958267 |
Target: 5'- gAGCGCGUgCCGcuGUCGgAGGUGACcgugGGCg -3' miRNA: 3'- -UUGUGCAgGGC--CAGCaUCUACUG----CUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 138028 | 0.78 | 0.386513 |
Target: 5'- cGGCGCGgCCCGG-CGgcGGUGGCGGCg -3' miRNA: 3'- -UUGUGCaGGGCCaGCauCUACUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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