Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23615 | 3' | -53.9 | NC_005261.1 | + | 53255 | 0.76 | 0.458303 |
Target: 5'- cGCGCGUCCCGGUCGcAGAccagcaUGuCGAUg -3' miRNA: 3'- uUGUGCAGGGCCAGCaUCU------ACuGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 47877 | 0.66 | 0.945923 |
Target: 5'- cGGCAgCGUCCgGGgagCGgcGgcGGCGGCg -3' miRNA: 3'- -UUGU-GCAGGgCCa--GCauCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 32469 | 0.66 | 0.936484 |
Target: 5'- gGGCACGgacucgggcuUCCCGGggcCGgcGAcGGCGGCa -3' miRNA: 3'- -UUGUGC----------AGGGCCa--GCauCUaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 32398 | 0.66 | 0.958267 |
Target: 5'- --gGCGUCCCGGagcgCGUGccgccGccGGCGACg -3' miRNA: 3'- uugUGCAGGGCCa---GCAU-----CuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 23697 | 0.66 | 0.95439 |
Target: 5'- cGACGCGaggcccgCCCGGUCGgguggcaagcGGGUGGCcGCg -3' miRNA: 3'- -UUGUGCa------GGGCCAGCa---------UCUACUGcUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 23355 | 0.66 | 0.957128 |
Target: 5'- cGCGCGUgUCGGcCGUGacaaacgccgagccGGUGGCGAUg -3' miRNA: 3'- uUGUGCAgGGCCaGCAU--------------CUACUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 13072 | 0.68 | 0.902228 |
Target: 5'- gGGCGCGUCcgCCGGccCGUcGGcgGGCGGCg -3' miRNA: 3'- -UUGUGCAG--GGCCa-GCA-UCuaCUGCUG- -5' |
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23615 | 3' | -53.9 | NC_005261.1 | + | 357 | 0.78 | 0.386513 |
Target: 5'- cGGCGCGgCCCGG-CGgcGGUGGCGGCg -3' miRNA: 3'- -UUGUGCaGGGCCaGCauCUACUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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