Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 23697 | 0.66 | 0.95439 |
|
Target: 5'- cGACGCGaggcccgCCCGGUCGgguggcaagcGGGUGGCcGCg -3' miRNA: 3'- -UUGUGCa------GGGCCAGCa---------UCUACUGcUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 128481 | 0.66 | 0.950277 |
|
Target: 5'- gAGCGCGacaUCCUcGUCGUGGAgcuCGACg -3' miRNA: 3'- -UUGUGC---AGGGcCAGCAUCUacuGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 73963 | 0.66 | 0.949852 |
|
Target: 5'- gGGCGCG-CCCGGgccgucugccucaUCGUGGAgcUGAaGACg -3' miRNA: 3'- -UUGUGCaGGGCC-------------AGCAUCU--ACUgCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 71388 | 0.66 | 0.945923 |
|
Target: 5'- -cCGCGaCCCGGUacgCGUGGuaGGCGGCg -3' miRNA: 3'- uuGUGCaGGGCCA---GCAUCuaCUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 47877 | 0.66 | 0.945923 |
|
Target: 5'- cGGCAgCGUCCgGGgagCGgcGgcGGCGGCg -3' miRNA: 3'- -UUGU-GCAGGgCCa--GCauCuaCUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 32469 | 0.66 | 0.936484 |
|
Target: 5'- gGGCACGgacucgggcuUCCCGGggcCGgcGAcGGCGGCa -3' miRNA: 3'- -UUGUGC----------AGGGCCa--GCauCUaCUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 69297 | 0.67 | 0.926057 |
|
Target: 5'- cGGCGCGgggCgCCGGUggcggcgggagCGgGGGUGACGGCg -3' miRNA: 3'- -UUGUGCa--G-GGCCA-----------GCaUCUACUGCUG- -5' |
|||||||
| 23615 | 3' | -53.9 | NC_005261.1 | + | 81562 | 1.08 | 0.004653 |
|
Target: 5'- gAACACGUCCCGGUCGUAGAUGACGACg -3' miRNA: 3'- -UUGUGCAGGGCCAGCAUCUACUGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home