miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23615 5' -63.3 NC_005261.1 + 41538 0.66 0.639642
Target:  5'- -aGCC----CCGGCugGCCCGUGGCGGu -3'
miRNA:   3'- gcUGGcauaGGCCG--CGGGCGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 27502 0.66 0.639642
Target:  5'- gGACCGccagGUCUgGGCgggccagcuggGCCCGCccucgcaccuaGGCGGGc -3'
miRNA:   3'- gCUGGCa---UAGG-CCG-----------CGGGCG-----------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 34941 0.66 0.639642
Target:  5'- gCGGCCGgcgcgacCCGG-GCCCGgCGGCcuGGa -3'
miRNA:   3'- -GCUGGCaua----GGCCgCGGGC-GCCGc-CC- -5'
23615 5' -63.3 NC_005261.1 + 90210 0.66 0.639642
Target:  5'- gGGgCGg--CgGaGCGCCCucgcGCGGCGGGc -3'
miRNA:   3'- gCUgGCauaGgC-CGCGGG----CGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 91147 0.66 0.639642
Target:  5'- -aGCCGUGccgcCCGGCgagugGCCCG-GGCGGc -3'
miRNA:   3'- gcUGGCAUa---GGCCG-----CGGGCgCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 31843 0.66 0.639642
Target:  5'- -cGCCGUG-CUGGC-CUCGCGGCGc- -3'
miRNA:   3'- gcUGGCAUaGGCCGcGGGCGCCGCcc -5'
23615 5' -63.3 NC_005261.1 + 43268 0.66 0.63868
Target:  5'- aGugCGUucggggcGUCgCGGCcgccuuuCCCGCGGgGGGc -3'
miRNA:   3'- gCugGCA-------UAG-GCCGc------GGGCGCCgCCC- -5'
23615 5' -63.3 NC_005261.1 + 84891 0.66 0.637718
Target:  5'- uGGCUGgcggcgaaGGUGCCCGCccacaccuccgGGCGGGc -3'
miRNA:   3'- gCUGGCauagg---CCGCGGGCG-----------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 14442 0.66 0.630023
Target:  5'- uCGGCuCGc-UCgCGGgGCgCGCGGCGGa -3'
miRNA:   3'- -GCUG-GCauAG-GCCgCGgGCGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 70651 0.66 0.630023
Target:  5'- -cGCUGagGUUCGGCG-CCGCGGCcgcGGGc -3'
miRNA:   3'- gcUGGCa-UAGGCCGCgGGCGCCG---CCC- -5'
23615 5' -63.3 NC_005261.1 + 75054 0.66 0.630023
Target:  5'- uGGCCaugGUGUacaCCGcGCGCgC-CGGCGGGg -3'
miRNA:   3'- gCUGG---CAUA---GGC-CGCGgGcGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 97375 0.66 0.630023
Target:  5'- cCGGgCGUGUcgCCGcgcggcuuucGCGCCUGCcGCGGGc -3'
miRNA:   3'- -GCUgGCAUA--GGC----------CGCGGGCGcCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 114996 0.66 0.630023
Target:  5'- cCGGCCGccgcggccCCGGC-CCCGCGGaGGc -3'
miRNA:   3'- -GCUGGCaua-----GGCCGcGGGCGCCgCCc -5'
23615 5' -63.3 NC_005261.1 + 102719 0.66 0.630023
Target:  5'- -cGCCGcGUCC-GCGCCCGCcGCcaGGGc -3'
miRNA:   3'- gcUGGCaUAGGcCGCGGGCGcCG--CCC- -5'
23615 5' -63.3 NC_005261.1 + 10091 0.66 0.620407
Target:  5'- cCGACCcccgCC-GCGCCCcggcaGCGGCGGc -3'
miRNA:   3'- -GCUGGcauaGGcCGCGGG-----CGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 68830 0.66 0.620407
Target:  5'- gGGCCGUGg-CGGCcccCCCGUcccGCGGGg -3'
miRNA:   3'- gCUGGCAUagGCCGc--GGGCGc--CGCCC- -5'
23615 5' -63.3 NC_005261.1 + 104268 0.66 0.620407
Target:  5'- -cGCCGcgGUCuCGGCGgCUGC-GCGGGc -3'
miRNA:   3'- gcUGGCa-UAG-GCCGCgGGCGcCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 7765 0.66 0.620407
Target:  5'- cCGGCCGUGUgaGuGCGUaCGggaaGGCGGGg -3'
miRNA:   3'- -GCUGGCAUAggC-CGCGgGCg---CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 50469 0.66 0.618484
Target:  5'- aGACCacgaggacgCUcGCGUCCGCGGCGGc -3'
miRNA:   3'- gCUGGcaua-----GGcCGCGGGCGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 125014 0.66 0.610797
Target:  5'- gGGCCGUGcgcUCCaGCagGCUC-CGGUGGGg -3'
miRNA:   3'- gCUGGCAU---AGGcCG--CGGGcGCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.