miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23615 5' -63.3 NC_005261.1 + 81599 1.09 0.000769
Target:  5'- cCGACCGUAUCCGGCGCCCGCGGCGGGu -3'
miRNA:   3'- -GCUGGCAUAGGCCGCGGGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 21808 0.87 0.029472
Target:  5'- cCGGCCGgg-CCGG-GCCCGCGGCGGGc -3'
miRNA:   3'- -GCUGGCauaGGCCgCGGGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 1273 0.84 0.050485
Target:  5'- uGACUGUG-CCGGCGCCCaggcCGGCGGGg -3'
miRNA:   3'- gCUGGCAUaGGCCGCGGGc---GCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 63011 0.83 0.058357
Target:  5'- gCGGCCGcgcccgcgcgggcgCCGGCGCCCGCGGCGaGGc -3'
miRNA:   3'- -GCUGGCaua-----------GGCCGCGGGCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 86486 0.81 0.079593
Target:  5'- gCGGCCGgg-CCGGCGCCUgucuGCGGCaGGGg -3'
miRNA:   3'- -GCUGGCauaGGCCGCGGG----CGCCG-CCC- -5'
23615 5' -63.3 NC_005261.1 + 40248 0.8 0.090193
Target:  5'- gGGCCGUGagcgCCauggcGGCGgCCGCGGCGGGg -3'
miRNA:   3'- gCUGGCAUa---GG-----CCGCgGGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 67515 0.79 0.107302
Target:  5'- aGGCCagcGUcgCCgcGGCGCCCGCGGCGGc -3'
miRNA:   3'- gCUGG---CAuaGG--CCGCGGGCGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 127795 0.78 0.121343
Target:  5'- gCGGCgGg--CCGGCGCCgCgGCGGCGGGc -3'
miRNA:   3'- -GCUGgCauaGGCCGCGG-G-CGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 97803 0.78 0.124349
Target:  5'- gCGACCGUccgCCGGCGCCCccgcagaCGGCGGc -3'
miRNA:   3'- -GCUGGCAua-GGCCGCGGGc------GCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 128785 0.77 0.133785
Target:  5'- -cGCCGuUGUCUGGgcgcccggGCCCGCGGCGGGg -3'
miRNA:   3'- gcUGGC-AUAGGCCg-------CGGGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 109496 0.77 0.137075
Target:  5'- uGGCCGgggCCcGCGCCCGCcGCGGGg -3'
miRNA:   3'- gCUGGCauaGGcCGCGGGCGcCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 132702 0.77 0.140438
Target:  5'- uGGCCGUGcccgucCCGGCGCCCuaccucauuGCGGCGGc -3'
miRNA:   3'- gCUGGCAUa-----GGCCGCGGG---------CGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 52358 0.77 0.150988
Target:  5'- -cGCCGgagCCGGaGCCCGCGGCGGcGg -3'
miRNA:   3'- gcUGGCauaGGCCgCGGGCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 78141 0.76 0.158036
Target:  5'- -cGCCGcc-CCGGCGCCCGCcgcugccGGCGGGc -3'
miRNA:   3'- gcUGGCauaGGCCGCGGGCG-------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 29796 0.76 0.162252
Target:  5'- --cCCGgaggCCGGCGCCgGCGGCGcGGg -3'
miRNA:   3'- gcuGGCaua-GGCCGCGGgCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 1185 0.76 0.170176
Target:  5'- gCGGCCGgggCCGGgGCCgggCGCGGCGcGGa -3'
miRNA:   3'- -GCUGGCauaGGCCgCGG---GCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 83017 0.76 0.174267
Target:  5'- -cGCCGUcgCCGGCGCCCcCGGgaGGGc -3'
miRNA:   3'- gcUGGCAuaGGCCGCGGGcGCCg-CCC- -5'
23615 5' -63.3 NC_005261.1 + 68527 0.75 0.182281
Target:  5'- -uGCCGgcgccgCCGGCGCCCGCGcgcccccugcugcGCGGGc -3'
miRNA:   3'- gcUGGCaua---GGCCGCGGGCGC-------------CGCCC- -5'
23615 5' -63.3 NC_005261.1 + 44032 0.75 0.187069
Target:  5'- gCGGCCGccgCgCGGCGgCCGCGgGCGGGc -3'
miRNA:   3'- -GCUGGCauaG-GCCGCgGGCGC-CGCCC- -5'
23615 5' -63.3 NC_005261.1 + 81428 0.75 0.187069
Target:  5'- aGGCggCGUcgUCGGcCGcCCCGCGGCGGGc -3'
miRNA:   3'- gCUG--GCAuaGGCC-GC-GGGCGCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.