miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23615 5' -63.3 NC_005261.1 + 58499 0.75 0.191517
Target:  5'- gCGGCCGcuUuuGGCGCCCGCguccaggaGGCGGa -3'
miRNA:   3'- -GCUGGCauAggCCGCGGGCG--------CCGCCc -5'
23615 5' -63.3 NC_005261.1 + 46268 0.75 0.196057
Target:  5'- gCGACCGUGUCCccggGGCGCUC-UGGcCGGGc -3'
miRNA:   3'- -GCUGGCAUAGG----CCGCGGGcGCC-GCCC- -5'
23615 5' -63.3 NC_005261.1 + 52969 0.75 0.200692
Target:  5'- cCGcGCCG-GUgCGGCGCCgGCaGGCGGGg -3'
miRNA:   3'- -GC-UGGCaUAgGCCGCGGgCG-CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 11917 0.75 0.205421
Target:  5'- cCGGCCcgg-CCGGCGgCUGCGGCGGc -3'
miRNA:   3'- -GCUGGcauaGGCCGCgGGCGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 3534 0.75 0.205421
Target:  5'- gCGGCCGcc-UCGGCGCgcagCGCGGCGGGc -3'
miRNA:   3'- -GCUGGCauaGGCCGCGg---GCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 90098 0.75 0.205421
Target:  5'- gGGcCCGUucgCCGGCugggccgacgcgGCCCGCGGCGaGGg -3'
miRNA:   3'- gCU-GGCAua-GGCCG------------CGGGCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 91711 0.75 0.205421
Target:  5'- cCGGCUGcaaggCCGGCuCgCCGCGGCGGGc -3'
miRNA:   3'- -GCUGGCaua--GGCCGcG-GGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 68066 0.74 0.210247
Target:  5'- gGGCaCGgugGUCuCGGuCGCCCGCgggGGCGGGg -3'
miRNA:   3'- gCUG-GCa--UAG-GCC-GCGGGCG---CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 117677 0.74 0.220191
Target:  5'- gCGcCCGg--CCGG-GCCCGCGGCGaGGc -3'
miRNA:   3'- -GCuGGCauaGGCCgCGGGCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 98592 0.74 0.224795
Target:  5'- gGGCgaGUAggCGGCGCCCGCaaaauccGGCGGGu -3'
miRNA:   3'- gCUGg-CAUagGCCGCGGGCG-------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 88781 0.74 0.228956
Target:  5'- uCGGCCcUGgccgCCGGCGCCgCGCagcaggacgccggcGGCGGGg -3'
miRNA:   3'- -GCUGGcAUa---GGCCGCGG-GCG--------------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 30367 0.74 0.230534
Target:  5'- aGGCCGgcgcgCCGG-GCgCCGCGGCGcGGg -3'
miRNA:   3'- gCUGGCaua--GGCCgCG-GGCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 33600 0.74 0.230534
Target:  5'- gGGgCGgcgCCGGCGCggGCGGCGGGg -3'
miRNA:   3'- gCUgGCauaGGCCGCGggCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 55984 0.74 0.230534
Target:  5'- -cGCCGUcgCCaucGGCaaCCGCGGCGGGg -3'
miRNA:   3'- gcUGGCAuaGG---CCGcgGGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 5131 0.74 0.230534
Target:  5'- gCGGCCcg--CCGGCGCUCGCgcgccucggcccGGCGGGc -3'
miRNA:   3'- -GCUGGcauaGGCCGCGGGCG------------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 71055 0.73 0.241283
Target:  5'- -cGCCGUGggCCaGcCGCCgCGCGGCGGGc -3'
miRNA:   3'- gcUGGCAUa-GGcC-GCGG-GCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 13439 0.73 0.243482
Target:  5'- uCGACCGggugcaggcaggCCGGCGCCuCGgGGUGGa -3'
miRNA:   3'- -GCUGGCaua---------GGCCGCGG-GCgCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 31025 0.73 0.245143
Target:  5'- cCGGCCaaaagCCGGCGCgCCGCcggguccccagcgcGGCGGGa -3'
miRNA:   3'- -GCUGGcaua-GGCCGCG-GGCG--------------CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 50988 0.73 0.252447
Target:  5'- uCGGCCGacggCGGCGCgugggCGCGGCGGGa -3'
miRNA:   3'- -GCUGGCauagGCCGCGg----GCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 111447 0.73 0.258187
Target:  5'- aCGACCGgcgagCCGGgCGCCgGCgaggccaaaaGGCGGGc -3'
miRNA:   3'- -GCUGGCaua--GGCC-GCGGgCG----------CCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.