miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23615 5' -63.3 NC_005261.1 + 61 0.72 0.282216
Target:  5'- gGGCCGaaaUCGGCGCgCGCgggGGCGGGg -3'
miRNA:   3'- gCUGGCauaGGCCGCGgGCG---CCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 251 0.68 0.489174
Target:  5'- cCGGCUGcgg-CGGCGgCUGCGGCGGcGg -3'
miRNA:   3'- -GCUGGCauagGCCGCgGGCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 287 0.68 0.498184
Target:  5'- gCGGCUGcgg-CGGCGgCUGCGGCGGcGg -3'
miRNA:   3'- -GCUGGCauagGCCGCgGGCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 312 0.66 0.582079
Target:  5'- nGGCUGcgg-CGGCGgCUGCGGCGGcGg -3'
miRNA:   3'- gCUGGCauagGCCGCgGGCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 344 0.69 0.46262
Target:  5'- gCGGCCcgcagcCCGGCgcgGCCCgGCGGCGGu -3'
miRNA:   3'- -GCUGGcaua--GGCCG---CGGG-CGCCGCCc -5'
23615 5' -63.3 NC_005261.1 + 378 0.69 0.453937
Target:  5'- gCGGCgGUGg-CGGCGgCgGCGGCGGcGg -3'
miRNA:   3'- -GCUGgCAUagGCCGCgGgCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 1185 0.76 0.170176
Target:  5'- gCGGCCGgggCCGGgGCCgggCGCGGCGcGGa -3'
miRNA:   3'- -GCUGGCauaGGCCgCGG---GCGCCGC-CC- -5'
23615 5' -63.3 NC_005261.1 + 1273 0.84 0.050485
Target:  5'- uGACUGUG-CCGGCGCCCaggcCGGCGGGg -3'
miRNA:   3'- gCUGGCAUaGGCCGCGGGc---GCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 1389 0.67 0.534919
Target:  5'- aGGCCacg-CCgGGCGCcgcggCCGCGGCGGcGg -3'
miRNA:   3'- gCUGGcauaGG-CCGCG-----GGCGCCGCC-C- -5'
23615 5' -63.3 NC_005261.1 + 2259 0.68 0.480242
Target:  5'- aGGCCG---CCGGCGCUCGUccucgccgGGCGGc -3'
miRNA:   3'- gCUGGCauaGGCCGCGGGCG--------CCGCCc -5'
23615 5' -63.3 NC_005261.1 + 2595 0.68 0.480242
Target:  5'- gCGGCgGaagCCGcCGUCgGCGGCGGGg -3'
miRNA:   3'- -GCUGgCauaGGCcGCGGgCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 2728 0.69 0.445344
Target:  5'- cCGGCCGa--CUuGCGCuugcgCCGCGGCGGGc -3'
miRNA:   3'- -GCUGGCauaGGcCGCG-----GGCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 2947 0.68 0.480242
Target:  5'- gCGGCCGggcUCCGGCccggacuaggGCCCGggcugaGGCuGGGg -3'
miRNA:   3'- -GCUGGCau-AGGCCG----------CGGGCg-----CCG-CCC- -5'
23615 5' -63.3 NC_005261.1 + 3384 0.68 0.471389
Target:  5'- gCGGCCGccagccgcgCCGGCacuUCCGcCGGCGGGc -3'
miRNA:   3'- -GCUGGCaua------GGCCGc--GGGC-GCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 3534 0.75 0.205421
Target:  5'- gCGGCCGcc-UCGGCGCgcagCGCGGCGGGc -3'
miRNA:   3'- -GCUGGCauaGGCCGCGg---GCGCCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 3670 0.67 0.553645
Target:  5'- aGGCCGcggCCGGCaGgCCGCGGCc-- -3'
miRNA:   3'- gCUGGCauaGGCCG-CgGGCGCCGccc -5'
23615 5' -63.3 NC_005261.1 + 3847 0.71 0.321525
Target:  5'- gCGGCagCGgcgCCGGCGCCgCGCGGCcGGc -3'
miRNA:   3'- -GCUG--GCauaGGCCGCGG-GCGCCGcCC- -5'
23615 5' -63.3 NC_005261.1 + 4470 0.69 0.445344
Target:  5'- gCGGcCCGUcgCgCGGCG-CCGCGGCGu- -3'
miRNA:   3'- -GCU-GGCAuaG-GCCGCgGGCGCCGCcc -5'
23615 5' -63.3 NC_005261.1 + 4506 0.68 0.480242
Target:  5'- gGGCCccagUCGcGCGCCCGC-GCGGGc -3'
miRNA:   3'- gCUGGcauaGGC-CGCGGGCGcCGCCC- -5'
23615 5' -63.3 NC_005261.1 + 4916 0.66 0.601202
Target:  5'- gCGGCUGccUCCGccgcggccgcgaGCGCCCGCGccGCGGc -3'
miRNA:   3'- -GCUGGCauAGGC------------CGCGGGCGC--CGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.