miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 22708 0.66 0.963333
Target:  5'- aCGaGGCCGUcgaGGAGcCGGAGG--ACCaGCGc -3'
miRNA:   3'- -GC-CCGGCA---UUUC-GCCUUCaaUGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 21812 0.66 0.963333
Target:  5'- cCGGGCCGggcccGCGGcGGgcGCgCGUGc -3'
miRNA:   3'- -GCCCGGCauuu-CGCCuUCaaUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 102105 0.66 0.963333
Target:  5'- aGGGCCGac-AGCGc-AGggGCCGCc -3'
miRNA:   3'- gCCCGGCauuUCGCcuUCaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 34921 0.66 0.963333
Target:  5'- gGGGCgCGgccacGCGGggGgcgGCCgGCGc -3'
miRNA:   3'- gCCCG-GCauuu-CGCCuuCaa-UGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 3431 0.66 0.963333
Target:  5'- gCGGGCCagcguccAGGCGGGcgcgcGGgccGCCGCGc -3'
miRNA:   3'- -GCCCGGcau----UUCGCCU-----UCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 71627 0.66 0.959805
Target:  5'- gCGGGcCCGggcGGCGGGAaaacGCCGCc -3'
miRNA:   3'- -GCCC-GGCauuUCGCCUUcaa-UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 88872 0.66 0.959805
Target:  5'- gCGGGacagccucuCCGUu--GCGGuGGUUAgCGCGg -3'
miRNA:   3'- -GCCC---------GGCAuuuCGCCuUCAAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 123498 0.66 0.959805
Target:  5'- cCGGGCgcaccAGCGGcAG-UGCCGCGu -3'
miRNA:   3'- -GCCCGgcauuUCGCCuUCaAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 22968 0.66 0.959805
Target:  5'- aCGaGGCCGaGGAcCGGGAGgagGCgGCGg -3'
miRNA:   3'- -GC-CCGGCaUUUcGCCUUCaa-UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 32924 0.66 0.959805
Target:  5'- gGGGgCGgcGGGCGGggGggggGCgGgGa -3'
miRNA:   3'- gCCCgGCauUUCGCCuuCaa--UGgCgC- -5'
23616 3' -53.9 NC_005261.1 + 112240 0.66 0.958703
Target:  5'- gGaGGCCGUGGAGgccaucaccaCGGAGGUcgcgcggauccugcUcaACCGCGg -3'
miRNA:   3'- gC-CCGGCAUUUC----------GCCUUCA--------------A--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 126955 0.66 0.95605
Target:  5'- cCGGGCgCG-GGGGCGGcAGcgcgaACCGCGc -3'
miRNA:   3'- -GCCCG-GCaUUUCGCCuUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 23716 0.66 0.95605
Target:  5'- uCGGG-UGgcAAGCGGGug--GCCGCGc -3'
miRNA:   3'- -GCCCgGCauUUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 97692 0.66 0.95605
Target:  5'- gGGGCUGccGGGGCGGuGGggagACgGCGg -3'
miRNA:   3'- gCCCGGCa-UUUCGCCuUCaa--UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 107276 0.66 0.95605
Target:  5'- gCGGGCgCGcaucAGGCGGcAGgcacuccGCCGCGg -3'
miRNA:   3'- -GCCCG-GCau--UUCGCCuUCaa-----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 120002 0.66 0.95605
Target:  5'- gGGcGCCGgcuacGCGGccGUgUGCCGCGc -3'
miRNA:   3'- gCC-CGGCauuu-CGCCuuCA-AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 123186 0.66 0.95605
Target:  5'- gGuGGCUGguguGGGCGGAcccAGccGCCGCGu -3'
miRNA:   3'- gC-CCGGCau--UUCGCCU---UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 65820 0.66 0.95605
Target:  5'- cCGGGCgGc--GGCGcGAAGcugcccgagUGCCGCGa -3'
miRNA:   3'- -GCCCGgCauuUCGC-CUUCa--------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 29258 0.66 0.952063
Target:  5'- aCGGGCCGccgccGCuGGAGGgc-CCGCu -3'
miRNA:   3'- -GCCCGGCauuu-CG-CCUUCaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 119289 0.66 0.952063
Target:  5'- gGGGCuCGccgagGAAGCGGAGGgcgagGCCuCGc -3'
miRNA:   3'- gCCCG-GCa----UUUCGCCUUCaa---UGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.