miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 108734 0.68 0.911495
Target:  5'- gCGGGCC----AGCGGcGGc-GCCGCGg -3'
miRNA:   3'- -GCCCGGcauuUCGCCuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 102301 0.68 0.911495
Target:  5'- gCGGGUCGUAGccGCGcGccGcgGCCGCGg -3'
miRNA:   3'- -GCCCGGCAUUu-CGC-CuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 15442 0.68 0.911495
Target:  5'- gCGGGCCGgcGA-UGGAgaagagcacguGGUUcucgACCGCGg -3'
miRNA:   3'- -GCCCGGCauUUcGCCU-----------UCAA----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 119561 0.68 0.911495
Target:  5'- gGGGCCGc-AAGUGGAugc-GCUGCGa -3'
miRNA:   3'- gCCCGGCauUUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 14041 0.68 0.911495
Target:  5'- gGGGCCaugcGAGCGGuccgcAGgcagGCCGCGu -3'
miRNA:   3'- gCCCGGcau-UUCGCCu----UCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2413 0.68 0.911495
Target:  5'- gCGGGCCccgc-GCGGcGGcggGCCGCGa -3'
miRNA:   3'- -GCCCGGcauuuCGCCuUCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74428 0.68 0.911495
Target:  5'- aGGGCCGaggAGAGCgcccccccggcgGGggGUgggggcGCCGCc -3'
miRNA:   3'- gCCCGGCa--UUUCG------------CCuuCAa-----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 74723 0.68 0.905327
Target:  5'- cCGGGCC-----GCGGcAGcgGCCGCGg -3'
miRNA:   3'- -GCCCGGcauuuCGCCuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 33901 0.68 0.905327
Target:  5'- gGGGCgCGcguaUAAAGCGGG----GCCGCGu -3'
miRNA:   3'- gCCCG-GC----AUUUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 79099 0.68 0.905327
Target:  5'- gGGGuuGcugcgGAGGCGGGAGaugUACCGg- -3'
miRNA:   3'- gCCCggCa----UUUCGCCUUCa--AUGGCgc -5'
23616 3' -53.9 NC_005261.1 + 34342 0.68 0.905327
Target:  5'- gGGGCCGg--GGCGGccgacggggccGGgcGCCGCGc -3'
miRNA:   3'- gCCCGGCauuUCGCCu----------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 53586 0.69 0.870197
Target:  5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3'
miRNA:   3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 52979 0.69 0.870943
Target:  5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3'
miRNA:   3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5'
23616 3' -53.9 NC_005261.1 + 68994 0.69 0.870943
Target:  5'- uCGGGCCGc---GCGGGc---GCCGCGg -3'
miRNA:   3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 88172 0.69 0.876102
Target:  5'- cCGGGCCGgggcgacgccGGCGGcgccggcGAGgcggGCCGCGc -3'
miRNA:   3'- -GCCCGGCauu-------UCGCC-------UUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 232 0.69 0.878279
Target:  5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 137915 0.69 0.878279
Target:  5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 68128 0.69 0.878279
Target:  5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3'
miRNA:   3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127338 0.69 0.878279
Target:  5'- gGGGCCGgagcGGCGGGgcgcuGGgc-CCGCGu -3'
miRNA:   3'- gCCCGGCauu-UCGCCU-----UCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98738 0.69 0.863388
Target:  5'- aCGcGGCCGc---GCGGgcGUUgGCCGCGc -3'
miRNA:   3'- -GC-CCGGCauuuCGCCuuCAA-UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.