Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 12579 | 0.69 | 0.839463 |
Target: 5'- gGGGCCGaGAggggcgccuAGCGGAGGaUggacuucaGCCGCGc -3' miRNA: 3'- gCCCGGCaUU---------UCGCCUUCaA--------UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 56147 | 0.69 | 0.839463 |
Target: 5'- gCGGGCCG-AGGGUGGcGGcaGCgGCGg -3' miRNA: 3'- -GCCCGGCaUUUCGCCuUCaaUGgCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 51359 | 0.69 | 0.863388 |
Target: 5'- uGGGCUGUccGGCGcGGAGUacgcgcagGCCGUGc -3' miRNA: 3'- gCCCGGCAuuUCGC-CUUCAa-------UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 98142 | 0.69 | 0.863388 |
Target: 5'- gGcGGCCGUc-GGCGGcAAG--GCCGCGg -3' miRNA: 3'- gC-CCGGCAuuUCGCC-UUCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 98924 | 0.69 | 0.863388 |
Target: 5'- gGGGUCGgcu-GCGGggGgcAgCGCGu -3' miRNA: 3'- gCCCGGCauuuCGCCuuCaaUgGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 2584 | 0.69 | 0.878279 |
Target: 5'- cCGGGCgGcacgcGGCGGAAGccGCCGuCGg -3' miRNA: 3'- -GCCCGgCauu--UCGCCUUCaaUGGC-GC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 127338 | 0.69 | 0.878279 |
Target: 5'- gGGGCCGgagcGGCGGGgcgcuGGgc-CCGCGu -3' miRNA: 3'- gCCCGGCauu-UCGCCU-----UCaauGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68128 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3' miRNA: 3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 137915 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3' miRNA: 3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 232 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3' miRNA: 3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 88172 | 0.69 | 0.876102 |
Target: 5'- cCGGGCCGgggcgacgccGGCGGcgccggcGAGgcggGCCGCGc -3' miRNA: 3'- -GCCCGGCauu-------UCGCC-------UUCaa--UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68994 | 0.69 | 0.870943 |
Target: 5'- uCGGGCCGc---GCGGGc---GCCGCGg -3' miRNA: 3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 52979 | 0.69 | 0.870943 |
Target: 5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3' miRNA: 3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 53586 | 0.69 | 0.870197 |
Target: 5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3' miRNA: 3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 98738 | 0.69 | 0.863388 |
Target: 5'- aCGcGGCCGc---GCGGgcGUUgGCCGCGc -3' miRNA: 3'- -GC-CCGGCauuuCGCCuuCAA-UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 104186 | 0.69 | 0.863388 |
Target: 5'- gCGGGUCGUcgGGCGGGacggcguccAGgcGCuCGCGc -3' miRNA: 3'- -GCCCGGCAuuUCGCCU---------UCaaUG-GCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 120939 | 0.7 | 0.813801 |
Target: 5'- cCGGGCgCGggAAGGUGGAGGcucgcgccCCGCGg -3' miRNA: 3'- -GCCCG-GCa-UUUCGCCUUCaau-----GGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 9619 | 0.7 | 0.822535 |
Target: 5'- gGGGUgGgcAGGCGGggGUggggGCUGgGu -3' miRNA: 3'- gCCCGgCauUUCGCCuuCAa---UGGCgC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 97018 | 0.7 | 0.831092 |
Target: 5'- gCGGGCCGUcgGGCGcgcccgGCCGCc -3' miRNA: 3'- -GCCCGGCAuuUCGCcuucaaUGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 72828 | 0.7 | 0.804897 |
Target: 5'- aGGGCCGcAAGGCGGucggccAGGgcGCCaGCGc -3' miRNA: 3'- gCCCGGCaUUUCGCC------UUCaaUGG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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